Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0600 ATGGAGCTTAGTTTTAAGCACCAACTTGGCCTCGTTTGTGTCATACTGCTCTTTCCTGCACTGTGCTACTGCCAGGAATATACCAAATCCAGGGCAACCTTTTACGGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGAGAATATGGAAGAACAATGAATTGGTATGATGGAAGAGTCGCAGGGGTGTCTGGGCTATATAGAAATGGAGCTGGCTGTGGCACATGTTATCAGGTAAGGTGTCTAGTAGCAGAGTTATGTGACACGAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTGATGAGCCCACGCGCCTTCTCAAAATTGGGACGCGATCAATATTCATCTGAAGAGCTTCAGAAATACGGAACAGTGGATATTGAATACAAAAGGGTTCCATGCACATACACCGGCAATGTCTTGTTCCACATCGACGAATCTAGCTCCAACCCTGGCTACTTTGCTTTGGTCATTCTCAACGTAAATGGAATTCACGACATCACTGCTGTTGAAATCTATCAGGCGGAGTCTCGACAGTGGAAGTCACTTAACAGGAACCATGGAGCAGTGTTTGACTTTCCTAACCCACCGAGTGGTGAAATCCGGTTGAGGTTTAAGGTGAGTGGCATGTCTGGTTGGGTGGATCCTAAGATTGTTATACCTAGTAACTGGAAGCCTGGGAATACTTATGCCACCGAGGTTCAGCTTAATTAA 750 0.4653 MELSFKHQLGLVCVILLFPALCYCQEYTKSRATFYGTSDGYGTPTGACGFGEYGRTMNWYDGRVAGVSGLYRNGAGCGTCYQVRCLVAELCDTNGAYLVATDQGYGDRTDFVMSPRAFSKLGRDQYSSEELQKYGTVDIEYKRVPCTYTGNVLFHIDESSSNPGYFALVILNVNGIHDITAVEIYQAESRQWKSLNRNHGAVFDFPNPPSGEIRLRFKVSGMSGWVDPKIVIPSNWKPGNTYATEVQLN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0600 249 Pfam Lytic transglycolase 64 141 IPR009009 -
Aed6g0600 249 Gene3D - 19 147 IPR036908 -
Aed6g0600 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 244 IPR007117 -
Aed6g0600 249 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Aed6g0600 249 Pfam Expansin C-terminal domain 153 233 IPR007117 -
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Aed6g0600 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aed6g0600 249 Gene3D - 148 248 IPR036749 -
Aed6g0600 249 PANTHER EXPANSIN-B3 4 249 - -
Aed6g0600 249 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Aed6g0600 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Aed6g0600 249 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0600 Aed-Chr6 5064421 5066262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0600 1 248 Expansin Gene Family AT4G17030 44.048 2.05e-74 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0600 - - gmx:100778963 478.789