Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0599 ATGGAACTCGGTTTTAGGCTTGTTTGTGTCATATTGCTCTTCCCTGCACTGTGCAACTGCCAAGAATATTTCACGAAATCAAGAGCAACCTATTATGGTACCCCTGATGGCTACGGGACTCCAACTGGAGCTTGTGGCTTTGGCGAATTTGGAAGGTTCATGGATGGGTATGGTGGAAGAGTCGCAGGTGTGTCTGGGTTATGGAGGAATGGTGCTGCCTGTGGTGCATGCTATCAGGTAAGGTGCAAAATACCAAAATTATGCGATGTGAATGGAGTAACCCTAGTGGCAACAGATCAGGGTTATGGAGACAGAACAGACTTCATCATGAGTCCACGCGCCTTCTCAGGTTTGGGACTCAACAAGATTGCATCCGAAGAAATTAAGAAAAAGGGCACAGTGGACATTGAATACAAAAGGGTTCCCTGCAAATACACCAGCAACAATGTCTTGTTTCATATCAAGGAAACTAGCAGCAACCCTGGTTACTTCGCTGTAGTCATTCTCTTTGTAAATGGAAAATACGACGTCACTGATGTTCAAATGTGGCAGAAGAGTGAGCAACGATGGGAACCACTGCGAAGGTCCTATGGGGCAGTGTTTGACTTTGCAAACCCACCGAGTGGTGAGATCCTCTTGAGGTTTAAAGTGGGCTTTAATTGGAAGCTGGTGAAGAAAATCCCTGCTAATTGGAAGCCTGGAGCTACTTATGACACTAAGGTTCAATTTTAG 732 0.4549 MELGFRLVCVILLFPALCNCQEYFTKSRATYYGTPDGYGTPTGACGFGEFGRFMDGYGGRVAGVSGLWRNGAACGACYQVRCKIPKLCDVNGVTLVATDQGYGDRTDFIMSPRAFSGLGLNKIASEEIKKKGTVDIEYKRVPCKYTSNNVLFHIKETSSNPGYFAVVILFVNGKYDVTDVQMWQKSEQRWEPLRRSYGAVFDFANPPSGEILLRFKVGFNWKLVKKIPANWKPGATYDTKVQF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0599 243 Pfam Lytic transglycolase 61 138 IPR009009 -
Aed6g0599 243 Pfam Expansin C-terminal domain 151 225 IPR007117 -
Aed6g0599 243 PANTHER EXPANSIN-B1-LIKE PROTEIN 6 242 - -
Aed6g0599 243 Gene3D - 144 240 IPR036749 -
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Aed6g0599 243 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Aed6g0599 243 SUPERFAMILY Barwin-like endoglucanases 11 147 IPR036908 -
Aed6g0599 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 148 IPR007112 -
Aed6g0599 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 239 IPR007117 -
Aed6g0599 243 Gene3D - 16 143 IPR036908 -
Aed6g0599 243 PANTHER EXPANSIN-B3 6 242 - -
Aed6g0599 243 SUPERFAMILY PHL pollen allergen 149 238 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0599 Aed-Chr6 5062210 5063334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0599 3 241 Expansin Gene Family AT4G17030 46.939 3.07e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0599 - - gmx:100813628 445.662