Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0598 ATGGAACCAAGTTTTAAGCACCAACCTGGGCTTGTTTGTGTGATATTGCTCTTCCCTGCACTGTGTAGCTGCAACCAGTACTTTACGAACTCCAGAGCAAGCTATTATAATACCCCTGATGCCCTTGGAAATCCAAGTGGAGCTTGTGGCTTTGAAGAATATGGAAGAACGATTAATAATGGCAGTGTAGCAGCCGTATCAGGAATATGGAGGGATGGAGCTGGCTGTGGCACATGTTATTGGGTACGCTGCAAAATTCCACAATACTGCGGGAAAGGAGTGCAGGTGGTGGCGACAGACCATGGTTCAGGAGACAGAACAGACTTCATAATGAGCAAACGTGGATTCTCAGGATTGGCACGCAACGAAGCTGCTTCTAAAGAGCTTTTCAAACGCGGGGTGGTGGATATTGCATTCACTAGGGTTCCCTGTAACTACCCTGGTAACATTAAGCTCCGTGTCCAGAAGAGCAGCAAAAACCCTGGCTATTTTGCTAGAGGGCAGAAACGATGGGAGCCATTACGCAGGGTTTATGGGGCAGTATTTGACTATGCAAACCCACCTAGTGGTGCAATTCTGTTGAGGTTTCAAGTTGACTATAGATATTGGCTGCATTCAAATAATCCTATCCCTGCTAATTGGAAGTATGAAGCTACTTATGATACCAAAGTTCAGATTTATTAG 684 0.4547 MEPSFKHQPGLVCVILLFPALCSCNQYFTNSRASYYNTPDALGNPSGACGFEEYGRTINNGSVAAVSGIWRDGAGCGTCYWVRCKIPQYCGKGVQVVATDHGSGDRTDFIMSKRGFSGLARNEAASKELFKRGVVDIAFTRVPCNYPGNIKLRVQKSSKNPGYFARGQKRWEPLRRVYGAVFDYANPPSGAILLRFQVDYRYWLHSNNPIPANWKYEATYDTKVQIY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0598 227 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Aed6g0598 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Aed6g0598 227 Gene3D - 20 145 IPR036908 -
Aed6g0598 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 152 222 IPR007117 -
Aed6g0598 227 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 226 - -
Aed6g0598 227 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Aed6g0598 227 Gene3D - 165 227 IPR036749 -
Aed6g0598 227 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Aed6g0598 227 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Aed6g0598 227 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Aed6g0598 227 SUPERFAMILY PHL pollen allergen 148 222 IPR036749 -
Aed6g0598 227 PANTHER EXPANSIN-B3 4 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0598 Aed-Chr6 5058758 5060219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0598 11 226 Expansin Gene Family AT4G17030 43.568 1.29e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0598 - - gmx:100776296 424.091