Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0590 ATGAATGCGTGCAACGCATTTGACAAGTGTTCAGTCAGCACAAATGAGCACCACATCGTCCCGTATGCCATTTTGAGTGGATTCATATTTCTTTTATATAAAGATACGATACATCCCAATATGAATTCAAGACCAATGGAGGATGATATGATGTACTCAAGTGGAGATTTCACTACAAGAACTATACGTGGTCGTAGACGACCTGGAAGTAGTTGTAGACAGAGTACAGGAAGGGGCATACAGGGTACCCGGAGCCACCCTACTCAGAAGAGGGTGAGAGAAGCAGAAGAAGAAGACCGGAAAATTCATAAAAAAACCATTTTGTCATGGTTGATAGACTGTGAGATTATTAACGAAGGTGAACAAGTATGCTATAACAATGGCACGATAAGCATAACAGGAAAAATTACCAGGGGTGGAATTCACTGCAGCTGTTGCCAGGAGGAAACATCAGTGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAACCCTATGAACATATTTGCGTCAGACAAACCAAATCCCTCCGGAAATGCCAGAAGGATGCTTGGAAATTTACCAGGGGAGATGCATGCCGGCATAAGTTTACATATGTGCCGAAAGAAACTGCTGAGGACAAAAAGGATGCTGCCTGTCCAGTCTGTGGCGACGGGGGAGACTTAATCTGCTGTGACCAGTGTCCCTCTACATACCATCTATCGTGCTTGAATATAGAGATGGTTCCCGAAAATGATTGGTTTTGTCCATATTGTGTTTGCAAATACTGTGGGCTGGTTGTATTAAAAAAAGGAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTGTAAGATTTCTCGAGGGATCAAAATTGGCATCTGGTTTGTTAACACCCCCCCCCTCTTTCATGCTTCTGCTGTAGGTCATTGGGAGTGCTTTGAAGAATTCTCAAAAGAACCTGTGGACCTTAAGCCTCCAAGATCATATTGTGGGCCAGGTTGCCGAGAGATATACAAGAAATTGGATGTCTCACTCGGAATCAGAAATGATTATTCAGCAAAATACTTTTGGAGAGTTATCCGCCGACCAGATAAGACAACCAAGAAGGTTTTTGCAGATAGGAATATATACTCCTCAGAAAATAATTCAAGTGTTGCAGTTACTTGGATGTTAATGGATGAAGCTTTCATGACATCAACTGACTCACTTACAGGCATCAACATGATTAAAAGTATAGTTTACAGTCGTAGGTCAAACTTAACCAGGGTTGATTTTAGACGTTTTTATATGTTTGTTCTGGAGAAAGAAGATGAGATCATTGCTGCAGCTTCTATAAGATTTCATGGGGGAGGGATTGCAGAAATGCCATTTATGGCTACAGACATGTCATTCAGGGGCCAAGGAGTTTGCCGCAAATTAATGAGGATAATTGAATCGTTCCTACGTGACCTTAAAGTCACAAAGTTGATAATTCCATCTATGCCAACGACTTCTGATATGTGGAAGCACAAGTTCAACTTTGCTGAGGTGAGCGAAGAGCTGATGAGAGAAATATCCTCCTATAAAATTTTGATGTTCCCTGGTTGTTTAAGACTGTGCAAGGACTTATCAGAAAGCATAGCAGACGGCGGTGATGGCATCGAAGACAATCAAACTGACACAAAGAATGACCTGGAACTGCAAACAGCACAGGCAGAGGCTACTGCTAGACTTGACATGGACCCTCACCAGTCACCAGGAAGATTAGTAGAAGCAAAAGGGTCGCAGGTATACTTTTTGGATACTTTTTCTAGGTATACTTTAAATTATGAAGACAATTTATGA 1806 0.4192 MNACNAFDKCSVSTNEHHIVPYAILSGFIFLLYKDTIHPNMNSRPMEDDMMYSSGDFTTRTIRGRRRPGSSCRQSTGRGIQGTRSHPTQKRVREAEEEDRKIHKKTILSWLIDCEIINEGEQVCYNNGTISITGKITRGGIHCSCCQEETSVWTFEKHAGSDLRQPYEHICVRQTKSLRKCQKDAWKFTRGDACRHKFTYVPKETAEDKKDAACPVCGDGGDLICCDQCPSTYHLSCLNIEMVPENDWFCPYCVCKYCGLVVLKKGGFKCSQCDKKCKISRGIKIGIWFVNTPPLFHASAVGHWECFEEFSKEPVDLKPPRSYCGPGCREIYKKLDVSLGIRNDYSAKYFWRVIRRPDKTTKKVFADRNIYSSENNSSVAVTWMLMDEAFMTSTDSLTGINMIKSIVYSRRSNLTRVDFRRFYMFVLEKEDEIIAAASIRFHGGGIAEMPFMATDMSFRGQGVCRKLMRIIESFLRDLKVTKLIIPSMPTTSDMWKHKFNFAEVSEELMREISSYKILMFPGCLRLCKDLSESIADGGDGIEDNQTDTKNDLELQTAQAEATARLDMDPHQSPGRLVEAKGSQVYFLDTFSRYTLNYEDNL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0590 601 MobiDBLite consensus disorder prediction 60 86 - -
Aed6g0590 601 Pfam PHD-finger 214 255 IPR019787 -
Aed6g0590 601 PANTHER GNAT FAMILY ACETYLTRANSFERASE 303 544 - -
Aed6g0590 601 ProSiteProfiles Zinc finger PHD-type profile. 211 256 IPR019787 -
Aed6g0590 601 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 384 521 IPR000182 GO:0016407
Aed6g0590 601 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 418 490 IPR016181 -
Aed6g0590 601 MobiDBLite consensus disorder prediction 60 97 - -
Aed6g0590 601 SUPERFAMILY FYVE/PHD zinc finger 206 260 IPR011011 -
Aed6g0590 601 PANTHER GNAT FAMILY ACETYLTRANSFERASE 75 280 - -
Aed6g0590 601 PANTHER PHD FINGER PROTEIN 12 75 280 IPR042163 GO:0003714|GO:0045892
Aed6g0590 601 Gene3D - 402 518 - -
Aed6g0590 601 Pfam Tify domain binding domain 134 184 IPR032308 -
Aed6g0590 601 Pfam Acetyltransferase (GNAT) family 419 483 IPR000182 GO:0016407
Aed6g0590 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 285 IPR013083 -
Aed6g0590 601 PANTHER PHD FINGER PROTEIN 12 303 544 IPR042163 GO:0003714|GO:0045892
Aed6g0590 601 CDD NAT_SF 424 485 - -
Aed6g0590 601 SMART PHD_3 213 254 IPR001965 -
Aed6g0590 601 CDD PHD2_CHD_II 214 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0590 Aed-Chr6 4981651 4985347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0590 104 530 PHD Transcription Factor Family AT4G14920 38.621 3.22e-94 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed6g0590 Acetyltransf_1 0.00016 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0590 - - pvu:PHAVU_009G190800g 571.622