Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0583 ATGGGCTTCATGAAGGAGGATAAAGTTGATGATCATGTGTCAATGAATGATAAGTTAGGAGATGAATGGTTGAGTTTAGGCACGAAAGGAGATGATGCAGTAGGTGGTGATAAAAAGCCATGTTCTTCCAAATATTCAAAACCTCTCCACAGAAAGTTATTCTCATGCATGTACTGCTCCAGAAAGTTTTACTGTTCACGAGCCTTAGGGGGTCACCAGAATGCACACAGGAGGGAAAAACAAGCTGCAGCTAGAACAATAAGCACTTACCGATCTCATCATCATCATCATCTTATGATGCTGACATCATCAACTCGGTCACTGGGAATACAAACTCACTCACTTGTGCACAAGCCAATTAGCAGAGAAAGATCTGCTATGGTGGCTAGTTTCAGTACTACTAATGGAATACCCTTTATACCCTTTATGGTTGAACAAGAACAACCCGTGTACATCACATGGCCAGGTAGCTTTCACTTGGAGTTGCCAAAGCAAGACTCAGATGTTGTTATTAGCAGTAAGATTGACTTAGATCTTCGCCTCTGA 546 0.4176 MGFMKEDKVDDHVSMNDKLGDEWLSLGTKGDDAVGGDKKPCSSKYSKPLHRKLFSCMYCSRKFYCSRALGGHQNAHRREKQAAARTISTYRSHHHHHLMMLTSSTRSLGIQTHSLVHKPISRERSAMVASFSTTNGIPFIPFMVEQEQPVYITWPGSFHLELPKQDSDVVISSKIDLDLRL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0583 181 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Aed6g0583 181 PANTHER ZINC FINGER PROTEIN 4-LIKE 12 181 - -
Aed6g0583 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Aed6g0583 181 PANTHER ZINC FINGER PROTEIN 4-LIKE 12 181 - -
Aed6g0583 181 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0583 Aed-Chr6 4910938 4911483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0583 24 179 C2H2 Transcription Factor Family AT1G24625 36.196 5.22e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0583 - - ccaj:109809498 164.851