Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0578 ATGGTTCAAAAGGAAGATTTGGGTTTGAGTTTAAGCCTCAACTTCCCTCACAATACCCCAAATCCTCATCATCTCACCCTCATGTCATCCTCTACTCATTCATCTTCTCCCTCGGGTTGCCATCCTCAAAAACCCTCTTGGACCGAGGCTTTCGCTTCTTCCGATCGAAACTCCGCCACATGCAAAGGCGGCGAAACGCGGTCGTTCCTGCGGGGAATCGACGTGAACCGGTTACCTTCTGGCGTGGACACCGAGGAGGAAGCCGGAGTTTCGTCTCCGAACAGCACCGTCTCGAGCGTGAGCGGAAAACGCAGCGAGAGAGAAGAACCCAACGGCGAAGAACACGACATGGACGAAGAAGACGCTGAAACCTCAAGGAAGAAACTCAGACTCTCCAAAGACCAATCCGCTATACTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAACAAAAGTTGGCGCTTGCGAAACAGCTAGGCCTTCGACCGAGACAAGTAGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACTAAGCTGAAGCAAACAGAGGTGGACTGCGAGGTGTTAAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAAAAAGAGGTTCAGGAGCTAAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACGACTCTCACTATGTGCCCCTCTTGCGAGCGTGTGGCAGTTCCGTCCTCTGCCGTTGATTCTGCCACGCGTCATCATCATCATCATCCCATCGCCCATTCCCAGGCCCATACTCGGCCCATGCCCATTGGGCCTTGGGCCTCCGCAGCAGCTTCCATTCCGCACCGGCCGTTTGATGCCTTCCACCACTGA 876 0.5308 MVQKEDLGLSLSLNFPHNTPNPHHLTLMSSSTHSSSPSGCHPQKPSWTEAFASSDRNSATCKGGETRSFLRGIDVNRLPSGVDTEEEAGVSSPNSTVSSVSGKRSEREEPNGEEHDMDEEDAETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDSATRHHHHHPIAHSQAHTRPMPIGPWASAAASIPHRPFDAFHH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0578 291 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Aed6g0578 291 Coils Coil 181 218 - -
Aed6g0578 291 MobiDBLite consensus disorder prediction 245 276 - -
Aed6g0578 291 PANTHER - 4 283 - -
Aed6g0578 291 MobiDBLite consensus disorder prediction 13 64 - -
Aed6g0578 291 CDD homeodomain 126 183 IPR001356 GO:0003677
Aed6g0578 291 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Aed6g0578 291 SMART HOX_1 124 186 IPR001356 GO:0003677
Aed6g0578 291 MobiDBLite consensus disorder prediction 80 131 - -
Aed6g0578 291 SUPERFAMILY Homeodomain-like 119 183 IPR009057 -
Aed6g0578 291 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Aed6g0578 291 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Aed6g0578 291 MobiDBLite consensus disorder prediction 87 101 - -
Aed6g0578 291 Gene3D - 130 180 - -
Aed6g0578 291 CDD bZIP 175 214 - -
Aed6g0578 291 Pfam HD-ZIP protein N terminus 1 108 IPR006712 GO:0005634
Aed6g0578 291 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Aed6g0578 291 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Aed6g0578 291 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Aed6g0578 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0578 Aed-Chr6 4873941 4875846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0578 1 289 Homeobox Transcription Factor Family AT4G16780 63.140 2.06e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed6g0578 HD-ZIP_N 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0578 K09338 - gmx:100813367 486.493