Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0575 ATGACGCGGCGTTGCTCGCATTGCAGCCACAATGGGCACAACTCCAGGACATGCCCCAACCGCGGGGTTAAGCTATTCGGAGTCCGATTAACCGACGGGTCGATCCGAAAGAGCGCCAGCATGGGCAATCTAACCCACTACGCTGGCTCCGGGTCGGGTCCGCTTCTTACCGGGTCGAATAACCCGGGCTCTCCTGGTGAAACGCCCGATCACGCCGCCGCCGCCGACGGTTACGCCTCTGAGGACTTCGTTCCGGGGTCTTCTTCTAGCTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGGATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTTGCCAGTCACGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCCAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGAAAATCCAATGGTACAGCAAGACTTCTTGTCTGCTACTCAGTTACCGGCTGCTGAAACAGAAGGCAACAACAACCCCTTGCCTGCTCCTCCTCCCCCCCTTGACGAAGAGTGCGAATCCATGGATTCCACAAACTCAAACGATGGAGAGCCACCTGCCCCACCAAAGCTTGAAAATGCACAACCATCTTATCCAATGCTATATCCTGCGTATTATTCTCCGGTGTTCCCGTTCCCTCTGCCCTATTGGTCAGGATACAGTCCAGAGCCCACCAAGAAGGAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTTCATTCCAAAAGCCCAATCAATGTCGATGAACTGGTTGGCATATCAAAACTGAGTTTAGGTGAGTCCATTGGCGACTCCGGTCCCTCCACTCTGTCTCAAAAAATTCTTGAAGAAGGACCCTCCAGACAGTCGGCTTTTCACGCGACACCGACATGTGGCAGTTCAAACATGAATGGCAACGCCATCCATGCCGTTTAA 1017 0.5182 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLLTGSNNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAAENPMVQQDFLSATQLPAAETEGNNNPLPAPPPPLDEECESMDSTNSNDGEPPAPPKLENAQPSYPMLYPAYYSPVFPFPLPYWSGYSPEPTKKEETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSTLSQKILEEGPSRQSAFHATPTCGSSNMNGNAIHAV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0575 338 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Aed6g0575 338 PANTHER BNAC01G21010D PROTEIN 1 333 - -
Aed6g0575 338 SMART sant 96 146 IPR001005 -
Aed6g0575 338 MobiDBLite consensus disorder prediction 50 73 - -
Aed6g0575 338 CDD SANT 99 144 IPR001005 -
Aed6g0575 338 MobiDBLite consensus disorder prediction 296 338 - -
Aed6g0575 338 MobiDBLite consensus disorder prediction 80 99 - -
Aed6g0575 338 MobiDBLite consensus disorder prediction 50 66 - -
Aed6g0575 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Aed6g0575 338 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Aed6g0575 338 Gene3D - 98 150 - -
Aed6g0575 338 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g0575 338 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Aed6g0575 338 MobiDBLite consensus disorder prediction 186 228 - -
Aed6g0575 338 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Aed6g0575 338 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Aed6g0575 338 PANTHER TRANSCRIPTION FACTOR KUA1 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0575 Aed-Chr6 4838349 4842341 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed6g0575 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0575 - - gmx:778163 598.201