Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0571 ATGAACAGAGGAGCATGGACCCCAGAGGAAGACAGAAAGCTAGCCCAGTGCATTGAACTTCATGGTGCTAAGAGGTGGAAAACTGTTGCAACCAAATCAGGTTTAAATAGGTGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATAAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTTTTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGACAACGAAATAAAGAACTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGAGGAGAAACCAGAAAGCTCTGCGACACAGGAAATTATTGCTGATGGGGACAACCACCGTGCAATGTCAGAGAACAACAACGAGGTTGAAATTAATGAAACAAGTGGAATTATGAACTTAGTGGATGTTAGTAGTTTCGACGTGAACGAATTTTTCAACTTCTCTGAGGAATCCTTTGGGTTTGATTGGCTGAACAAGTACTTGGAACTTGACCAGATTCCTGAGACCACAGAGATATCTGAATGA 570 0.4211 MNRGAWTPEEDRKLAQCIELHGAKRWKTVATKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEEKPESSATQEIIADGDNHRAMSENNNEVEINETSGIMNLVDVSSFDVNEFFNFSEESFGFDWLNKYLELDQIPETTEISE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0571 189 Gene3D - 3 55 - -
Aed6g0571 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Aed6g0571 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 186 - -
Aed6g0571 189 CDD SANT 60 101 IPR001005 -
Aed6g0571 189 Gene3D - 59 131 - -
Aed6g0571 189 SMART sant 55 103 IPR001005 -
Aed6g0571 189 SMART sant 2 52 IPR001005 -
Aed6g0571 189 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 2 186 - -
Aed6g0571 189 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Aed6g0571 189 Pfam Myb-like DNA-binding domain 56 101 IPR001005 -
Aed6g0571 189 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Aed6g0571 189 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Aed6g0571 189 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Aed6g0571 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Aed6g0571 189 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0571 Aed-Chr6 4791851 4793004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0571 1 144 MYB Transcription Factor Family AT3G13540 55.556 1.95e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g0571 Myb_DNA-binding 4.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0571 K09422 - gmx:100811754 311.997