Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0553 ATGGATAACAGACACAAATGCAAGCTTTGTTCAAGGTCATTCACCAATGGAAGAGCACTTGGTGGCCACATGAAGGCTCACCTTGCTACGCTCCCTCTCCCTCCAAAGCTACCTCACACTCATTCTTATTCCTCTTCTTCCTCTGACTCAGAACAACAAGAACAATCTTTAAAGAAAAGCTTTGATCCGGAAGACAGAGAGAGCGAGACCGAGTCCAAGAACCCGACCCGCCAACGATCCAAGAGGACCAGGAAAACCACCATGCCGAAGCAGCTTAGCTTCGCAGTCTCCACACCTCCACGCCCCGAGCCCGAACCTGATCTCAGCTCCGTCTCCGACACCTCCCCTGAAGAAGACGTCGCCATGTGTCTCATGATGCTCTCCCGAGACACGTGGAAGGAACACGCTCACGCCCGCGCCAACGCCAATGCTAATAATGCAGCTCCATCACCACCCAAGAGGACGCGCTGCAGCGGATCAGAGATATTAATCAAGCCCAAGCAGCCTGTCCGTGTCCGTGTCCGTGGGAAGCACCTCTGTCACAATTGTGCGAAAGCATTTCGATCCTCTCGCGCGTTGGGGAGTCACAAAAGTATATGTTGTCGACACGAGGAAGGTGAAAATAGTAACAACAACAACAACACTAACTCTAACACTAAGGTTTTTGAATGTCCGTTCTGTTACAAGGTGTTTGGGTCTGGTCAAGCGCTCGGTGGACACAAGAGATCTCACCTGATTCCTTCTTCATCTTCAACCGTTATCGACTCTGTTAAGTTGAAACAACAGAGCTTCATAGATCTCAACTTGCCCGCTCCGGCCGAAGACGACGACCTTAGCGTTGTTTCTGATGCGTAA 855 0.5076 MDNRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKLPHTHSYSSSSSDSEQQEQSLKKSFDPEDRESETESKNPTRQRSKRTRKTTMPKQLSFAVSTPPRPEPEPDLSSVSDTSPEEDVAMCLMMLSRDTWKEHAHARANANANNAAPSPPKRTRCSGSEILIKPKQPVRVRVRGKHLCHNCAKAFRSSRALGSHKSICCRHEEGENSNNNNNTNSNTKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVIDSVKLKQQSFIDLNLPAPAEDDDLSVVSDA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0553 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Aed6g0553 284 MobiDBLite consensus disorder prediction 30 116 - -
Aed6g0553 284 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 64 284 IPR044303 GO:0006355
Aed6g0553 284 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 55 IPR044303 GO:0006355
Aed6g0553 284 Gene3D Classic Zinc Finger 175 244 - -
Aed6g0553 284 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 64 284 - -
Aed6g0553 284 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 55 - -
Aed6g0553 284 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Aed6g0553 284 SUPERFAMILY beta-beta-alpha zinc fingers 178 244 IPR036236 -
Aed6g0553 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 208 IPR013087 -
Aed6g0553 284 SMART c2h2final6 5 27 IPR013087 -
Aed6g0553 284 SMART c2h2final6 178 203 IPR013087 -
Aed6g0553 284 SMART c2h2final6 222 244 IPR013087 -
Aed6g0553 284 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Aed6g0553 284 Pfam C2H2-type zinc finger 4 29 - -
Aed6g0553 284 Pfam C2H2-type zinc finger 221 245 - -
Aed6g0553 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 244 IPR013087 -
Aed6g0553 284 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Aed6g0553 284 MobiDBLite consensus disorder prediction 39 54 - -
Aed6g0553 284 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0553 Aed-Chr6 4689055 4689909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0553 5 281 C2H2 Transcription Factor Family AT3G60580 37.248 1.14e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed6g0553 zf-C2H2_6 3.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0553 - - gmx:100806512 330.102