Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0550 ATGGCGTGGGAAACGAAGCGCGGTGGCTCAAATAATGCATGTTTTGTGCGATCGTTGGTGGTGGCGGTGCTGTTGTTGCTGTCTTCTTCGTCGGGGTTGTGTGTGGAAGCAGCGAAGAAGAACGCGTACGCGACGATGATGTACGTAGGTACACCGAGAGACTACGAATTCTACATAGCCATACGCGTGCTTCTCAAATCGCTGGCTACGCTCGACGCTCAAGCCGATCTTGTTGTCATTGCTTCCCTGGATGTTCCTCCTCGCTGGATTCGTGCTCTTGAAAAGGAAGATGGTGCGAAAGTAGTGAGAGTGGAAAATCTGGACAATCCCTACAAGCATCAAGATAATTTTGACAAGAGGTTCAAGCTATCGTTGAACAAACTCTACGCGTGGAGCTTAGTGGACTATGACAGGGTGGTGATGTTGGACGCAGACAACCTCTTCCTACATAATACGGACGAGTTGTTTCAATGTGGACAATTTTGTGCGGTCTTTATCAATCCTTGTGTGTTCCACACAGGACTCTTCGTCTTGCAGAATGGGAGAGAAAATCCTGATGGTGCTGATCAGGGTTTCATAGCTAGCTATTTCCCAGAGTTGCTTGATAAGCCAATGTTTCACCCACCAACGAATGGCACCAAGCTTGATGGAATATATAGGCTTCCTTTAGATCTTAAACTTCGCTGGAGCATACCCTGTGGACCAAATAGTGTGATCACATTCCCAGGGGCACCATGGTTGAAGCCATGGTATTGGTGGTCCTGGCCTGTTCTTCCATTAGGCCTCCAGTGGCATGATACACGTCGCCAAACTTTGGGGTATGGTACGGAGATGGCTGTGATATTTATTCAATCAGCAATATATTTGGGAATAATAGCAATGACACGTTTTGCAAGGCCAAGTCTCTCAAAGCTGTGCTATAACAGGCGCTCCGACAAGAGCATAAACTTGGTGCAGAACATCCTCAAATTGGTGGCATTGTGGAGCATCCTTGCGGCTTACACAACACCCTTCTTCATCATTCCTCACACGGTTCACCCTTTGTTAGGATGGCCCCTCTACTTGCTTGGTGTCTTTGCACTGTGCTCTGTTGCAGTCAATGCCTTTTTGCTGCCAATGTTGCCGGTTCTGATGCCGTGGCTCGGCATCATCGGTGCCTTGATGGTCATGGCTTTTCCTTGGTATTCAGATGGGGTGGTGAGAGCGTTGTGTGTTTTTGGTTATGCATTCGGTGCTGCACCGTTTGTGTGGGCGTCTATGACTAGGATTATGGCAGGGCTTCATCTGTCTCTAGAGAGGGAAGCTTTTTTGCCAAGATTAGGAGAATCTTCACCACCTTCTTGGTTTAACAAAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTATGTAACATTTGAAGGCGCGGGAAGGGATTTGACGGTGATAGAATGGCATGATCGGGCGAGTGACCCTGGTCCCAACGGCCAACAACTTCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAATTTTTTCTCAGCCAGGAATATCACCTTCAAGAACACAGCGCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATATCAGGTGACAAAGCCTATTTCTCCGGCTGTGGCTTCTACGGTGCACAAGACACTCTTTGCGACGACGCTGGCCGCCATTATTTCAAAGAATGTTACATCGAGGGCTCCATAGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGATTGCAAGCTACACTCAATTGCGACGAGGTTTGGGTCAATAGCAGCCCAAGATAGGCAATCCCCATACGAGAAGACGGGCTTCTCATTCGTACGGTGCAAGGTGACAGGAACAGGCCCAATTTACGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTATGCCTACACCTACTTCGACGACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCGACAACAATAACAAGGTGTGGTCGGCGAGGTACCACCACCATTCACCAACAAGCAAAATGGCTGCTACCGTTGGCGTTGGCGCCGCAAAAGCGATATCAATAGCAATAGCAGCGAGGCACCTCCGCGCGAAACCTTACGCAACAGCACTTGCTTTTCTCTCACTCCACAAACCTCTCTTCCTCCCTCACTCTTCTCCCTTCTTCCCCTCTCGCCGCGCTTTTTGCGCCGCGACTCTTCGCACCTCCGGCAACAACAGAGTGCAACAGTTCCGCAAGAAGCTTAGGGTTTCCGAAATCAAAGAAGGCGACGGCGCCGACGTGCTCGGCCGCAACCTCGTCGTGCAGGGCTGGGTTCGCACGCTTCGCGTTCAGAGCAGCATTAACGATGGTTCTTGCCTTTCTAACATGCAATTATGGGTGCAAGGAGTTGTGGTGAAGAGTCAAGGATCGAAGCAGAAAGTGGAATTGAAGGTTAACAAAATAGTACTGGTTGGCAAGAGCGATCCCTCCTTTCCCATCCAAAAGAAAAGAGCCAGCAGAGAATTTTTAAGAACAAAAGCACATCTTCGTGCTAGGACAAATACTTTTGGTGCAGTTGCAAGGGTTAGGAATGCATTGGCCTATGCTACACATAAGTTCTTCCAAGAAAATGGGTTTGTATGGGTCTCAAGTCCTATCATCACAGCATCAGATTGCGAGGGAGCGGGTGAACAGTTCTGCGTTACTACCTTGGTACCAAGTTCTCATGAAACTACTGATTCTCCTGTTGATGCTATTCCAAAAACAAATGACGGATTAATTGACTGGTCACAAGACTTCTTTGGAAAACCAGCATTCTTGACTGTTTCAGGTCAACTCAATGGTGAAACTTATGCTACTGCTCTCTCTGATGTGTATACATTTGGTCCCACATTCCGAGCAGAAAATTCTAACACTTCTAGGCACTTGGCTGAATTTTGGATGATTGAACCGGAGCTTGCATTTGCTGATCTAAATGATGACATGGCTTGTGCAACTGCTTATCTCCAGTTTGTAATAAGACATGTTCTCAATAACTGCAAGGAAGACATGGAGTTTTTTGATACATGGATTAATAAAGGAATCATTGATCGCTTGAGTGATGTAGCAGATAAAGATGTTGTGCAAATAACCTACACTGAAGCGATAGATCTGCTGTCAGGAGCTACTAAGAAATTTGAATTCCCGGTGAAATGGGGTAGTGATCTGCAGAGTGAACACGAGCGTTATATAACTGAAGAGGATATTAAAGCATTCTATATGCGACAGAATGATGATGGAAGGACAGTTGCAGCCATGGACATGTTGGTTCCAGGGATTGGTGAACTTATTGGTGGAAGCCAAAGAGAAGAAAGGCTTGAGTATCTAGAAGCTCGTTTAGATGATTTAAAGCTGAATAAGGATGCATATTGGTGGTATCTTGATTTGCGTCGATATGGTTCAGTACCTCATGCAGGCTTTGGTTTGGGCTTTGAAAGACTTGTCCAATTTGCAACAGGAATGGACAATATAAGGGATGTTATTCCTTTTCCTCGAACGCCTGGCTCGGCTGATAAAAAACAACCCTGTTTGCTTCTAAATGAAAACCATCGGAGTTTGAGTTCATCAATAAAAATGTAA 3612 0.4701 MAWETKRGGSNNACFVRSLVVAVLLLLSSSSGLCVEAAKKNAYATMMYVGTPRDYEFYIAIRVLLKSLATLDAQADLVVIASLDVPPRWIRALEKEDGAKVVRVENLDNPYKHQDNFDKRFKLSLNKLYAWSLVDYDRVVMLDADNLFLHNTDELFQCGQFCAVFINPCVFHTGLFVLQNGRENPDGADQGFIASYFPELLDKPMFHPPTNGTKLDGIYRLPLDLKLRWSIPCGPNSVITFPGAPWLKPWYWWSWPVLPLGLQWHDTRRQTLGYGTEMAVIFIQSAIYLGIIAMTRFARPSLSKLCYNRRSDKSINLVQNILKLVALWSILAAYTTPFFIIPHTVHPLLGWPLYLLGVFALCSVAVNAFLLPMLPVLMPWLGIIGALMVMAFPWYSDGVVRALCVFGYAFGAAPFVWASMTRIMAGLHLSLEREAFLPRLGESSPPSWFNKEKVVVPVTKPYVTFEGAGRDLTVIEWHDRASDPGPNGQQLRTYRTASVTVFANFFSARNITFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCKLHSIATRFGSIAAQDRQSPYEKTGFSFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWNTSDNNNKVWSARYHHHSPTSKMAATVGVGAAKAISIAIAARHLRAKPYATALAFLSLHKPLFLPHSSPFFPSRRAFCAATLRTSGNNRVQQFRKKLRVSEIKEGDGADVLGRNLVVQGWVRTLRVQSSINDGSCLSNMQLWVQGVVVKSQGSKQKVELKVNKIVLVGKSDPSFPIQKKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLVPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLNNCKEDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGATKKFEFPVKWGSDLQSEHERYITEEDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLEYLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTPGSADKKQPCLLLNENHRSLSSSIKM 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0550 1203 CDD AsxRS_core 835 1179 - -
Aed6g0550 1203 PRINTS Aspartyl-tRNA synthetase signature 938 950 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed6g0550 1203 PRINTS Aspartyl-tRNA synthetase signature 1098 1114 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed6g0550 1203 PRINTS Aspartyl-tRNA synthetase signature 954 967 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed6g0550 1203 PRINTS Aspartyl-tRNA synthetase signature 1138 1152 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed6g0550 1203 SUPERFAMILY Nucleotide-diphospho-sugar transferases 47 256 IPR029044 -
Aed6g0550 1203 ProSitePatterns Pectinesterase signature 2. 567 576 IPR033131 -
Aed6g0550 1203 Pfam tRNA synthetases class II (D, K and N) 838 1177 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed6g0550 1203 PANTHER ASPARAGINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 733 1182 - -
Aed6g0550 1203 SUPERFAMILY Class II aaRS and biotin synthetases 822 1181 IPR045864 -
Aed6g0550 1203 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 859 1173 IPR006195 -
Aed6g0550 1203 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 39 270 IPR029044 -
Aed6g0550 1203 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 733 1182 - -
Aed6g0550 1203 TIGRFAM asnS: asparagine--tRNA ligase 795 1181 IPR004522 GO:0000166|GO:0004816|GO:0005524|GO:0006421
Aed6g0550 1203 Pfam Pectinesterase 451 691 IPR000070 GO:0030599|GO:0042545
Aed6g0550 1203 Gene3D - 449 706 IPR012334 -
Aed6g0550 1203 SUPERFAMILY Pectin lyase-like 451 672 IPR011050 -
Aed6g0550 1203 Hamap Asparagine--tRNA ligase [asnS]. 675 1183 IPR004522 GO:0000166|GO:0004816|GO:0005524|GO:0006421
Aed6g0550 1203 CDD EcAsnRS_like_N 770 824 - -
Aed6g0550 1203 Gene3D Bira Bifunctional Protein; Domain 2 830 1181 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0550 Aed-Chr6 4649877 4684354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0550 40 451 Miscellaneous Gene Families AT4G16600 65.596 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0550 K01893 - gmx:100796860 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1625 11 20202905 20204457 Aed6g0550 6 4649877 4684354 PCT