Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0546 ATGATTTCTGTGTTCCTCAAAACCCTAATTGCCACTCGAACACATCCTCCTAAACTAACCGCCATTCGAACCATGAGCTCGCGCGTGTTCCAGCTCAAGCTGGACCCACTAAACGGCAACTCTGAATGGGTAGTAATCGAAGACAACGACGACGAAAGCTTCGCCCAGAATTTCCACCAACCCCTCCTTGCCACGACGTCGTATCTTGACATGCTCAACGACTCCGCCAGAAACGCTGCGTTTCGCCAAGCCATTGAAAAAACCATCACCAAACCTTGCCACGTTCTCGATATCGGTGCTGGAACCGGGTTGCTTTCGATGATGGCTGCACGTGCCATGGGTGGTGGCGAAGGGAGGGTCACGGCGTGCGAATCTTACCTTCCGATGGTGAAGCTGATGAAGAAGGTGCTGCGGATTAATGCCATGGAGGGAAGAGTTAAGGTTATCAACAAGCGCTCTGATGAACTCGTAGTTGGTCTCGATATTCCTTCACGCGCAGATGTTCTTGTAAGTGAGATACTTGATTCAGAGCTACTGGGTGAGGGGCTTATACCAACCCTACAACATGCACATGACAATTTGTTGGTAGAAAACGCTCTGACTGTGCCATATCGAGCAACTACATACGGACAGCTGGTTGAAAGCACATTCTTATGGCAGTTGCATGATTTGCATAACAGTGAAGCTACTATATCTGATGGCATTCGACTTACTCCTCCAGGACTTGATAGTGTGTTAAGTGTCAAACATCAGCAATATGCCATGCATTGCAATCCTTTACAAGAAGAAATAAAACTGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAGAAACTGAGCTGTGCATAAAGGCAACTAATGATGGGAGAGTTCATGCTGTGGTCTCTTGGTGGGTACTTCAACTTGATCATGAAGGGACCATCTATTATTCCACTGCTCCTAGGTGGATAAGCTCGCCAACCATGACAAGTCCTGTTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGCAGTGGTACTTCCATATTCAAAGGGGAAGAAATTCATTTGCATGCTACTCATACTGAAACTAGTATCTCGTATAATTTAGATACCCATGAACCAACAACTGAGATTTTGAACCATAGGTGGACAACCAGAGATTTGCAGGTTGTACTGCCACCAGAAAGGGCTGCAATCTATGGAGACAAAGGATGGAGGCTTTCAATGCTGGAAGCAGTACAAAGCATGTTGCAGGGAAGAGATTGCCCGTTATGTTTGGTTGCAGATGATAGTGTGTTTTTACCTCTTCTTGTGGCACAGCTTTCAGAAGCACCGCATGTATTGTCATTACTTCCGGGGCTGAAGGAAAGGGGCCTCCAATATTTGCAAGCTGCTGCCCATGCAAATGGTTTGTCACGTAGTTGCATAGAAGTTCTTGATAAAAGGGTGAAACAGTTAACCATGCATGATACACACCAGAAAAAGGTTGATCTGTTAATAGCAGAACCTTTCTACGTAGGACTTGATGGTATGCTTCCATGGCAGAACCTGCGGAGGGATCGTACAACACTTAATGATATCCTCTCAGAAGATGCTCTCATAATTCCTAGTAAAGGAATATTGAGAGCATGTGCCATCTCTCTCCCTGACCTTTGGAAAAGTCGTTGTTGCCTGAGTAATATTGAAGGTTTTGACCATTCAGTGGTAAATGCTACATTGGGGGCTTGCGGTCATCTACCTGAACTAGAAGAGGATCCTTGTCTTCCCTTTTCTGTCTGGCAGTGTGGAGAACATGATGTGCTTAGTGAGACTTTTGATGTGATGGAGTTTGATTTTTCAAAACAAATAGGCCAATGTCAAGGAAAATCCCAGGTTAAGTTCACCAAGACCGGGGTATGTCATGGATTTGTGCTGTGGATTGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGATAGGAGATATTGGAAGCAGGGAATAAAGCTTCTTGGAACACCTAGAACAGTAGGACCTCAAACTCAAAGATCAAGAAATGTCCAAGCATGTTGTTCTGCAGTTCTTGAAGCTTGTTTCAATCCATTACAGGGAGAACTCGAAATTATACTTGATTTCTTATGA 2154 0.4457 MISVFLKTLIATRTHPPKLTAIRTMSSRVFQLKLDPLNGNSEWVVIEDNDDESFAQNFHQPLLATTSYLDMLNDSARNAAFRQAIEKTITKPCHVLDIGAGTGLLSMMAARAMGGGEGRVTACESYLPMVKLMKKVLRINAMEGRVKVINKRSDELVVGLDIPSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENALTVPYRATTYGQLVESTFLWQLHDLHNSEATISDGIRLTPPGLDSVLSVKHQQYAMHCNPLQEEIKLLSEPFKIFEFDFWKRPESYGETELCIKATNDGRVHAVVSWWVLQLDHEGTIYYSTAPRWISSPTMTSPVGWCDHWKQCVWFVPGSGTSIFKGEEIHLHATHTETSISYNLDTHEPTTEILNHRWTTRDLQVVLPPERAAIYGDKGWRLSMLEAVQSMLQGRDCPLCLVADDSVFLPLLVAQLSEAPHVLSLLPGLKERGLQYLQAAAHANGLSRSCIEVLDKRVKQLTMHDTHQKKVDLLIAEPFYVGLDGMLPWQNLRRDRTTLNDILSEDALIIPSKGILRACAISLPDLWKSRCCLSNIEGFDHSVVNATLGACGHLPELEEDPCLPFSVWQCGEHDVLSETFDVMEFDFSKQIGQCQGKSQVKFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDRRYWKQGIKLLGTPRTVGPQTQRSRNVQACCSAVLEACFNPLQGELEIILDFL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0546 717 Gene3D - 547 716 - -
Aed6g0546 717 Gene3D Vaccinia Virus protein VP39 396 543 IPR029063 -
Aed6g0546 717 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 30 655 IPR025799 GO:0016274|GO:0018216
Aed6g0546 717 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 30 655 - -
Aed6g0546 717 Gene3D Vaccinia Virus protein VP39 61 204 IPR029063 -
Aed6g0546 717 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 466 693 IPR029063 -
Aed6g0546 717 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 379 717 IPR025799 GO:0016274|GO:0018216
Aed6g0546 717 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 55 377 IPR025799 GO:0016274|GO:0018216
Aed6g0546 717 CDD AdoMet_MTases 95 171 - -
Aed6g0546 717 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 68 374 IPR029063 -
Aed6g0546 717 Pfam Ribosomal protein L11 methyltransferase (PrmA) 83 176 - -
Aed6g0546 717 Gene3D - 205 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0546 Aed-Chr6 4625801 4631553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0546 56 209 C2H2 Transcription Factor Family AT3G12270 31.288 8.16e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0546 K11438 - gmx:100785846 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0546 6 4625801 4631553 Aed6g0546 6 4625801 4631553 ECH