Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0508 ATGGCCGATGAAGCCAAAGTCAAAGGCAACGCGGCGTTCTCCGCCGGTGACTTCGCCGCCGCGGTCCGCCACTTCACGGACGGCATCGCCGTCGCCCCCTCGAACCACGTCCTCTACTCGAACCGATCAGCGGCCCACGCCTCCCTCCAGAACTACGGCGAGGCCTTAGCCGACGCTCAGAAGACCGTGGACCTCAAGCCCGACTGGCCCAAGGGCTACAGCCGCCTCGGCGCCGCCCACCTCGGCCTCCGGCGCCACCGCGACGCCGTCTCCGCCTACAGGGCCGGCCTCAGACTCGACCCCGACAACGCCGCCCTCAAATCCGGGCTGGCCGACGCCCAAGCCGCGGCCTCCCGCCCGCCCCCCAGCAACCCCTTCGCCACCGCCTTCTCCGGCCCCGACATGTGGGCCCGCCTCACCGCGGACCCCACCGCACGTGCGTACCTCCAGGAGCCTGAGTTCGTGAGAATCATGCAGGACATTCAGAAGGACCCAAACAAGTTCAACTTGCACTTGAGTGACCAGAGAGTCATGCACGCCATTGGGGTTCTTCTCAATGTCAAAATTCAAACCCCTAATGATAACAACGACGAAGACGCTTCTGGTGATAATGATAATGATGATGACGTGTCCGAGGAGGAGGAGCCCGAGCCTGAAGCCAAACCCGAACCCGAGCCTGAGGAGGAGAACAATACGAAGGTTCAGGCTCAGAAGGACAAGGAAGCTGGCAATGCTGCTTACAAAAAGAAAGATTTCGAAACCGCCATTGGACATTACACCAAGGCTTTGGAGTTCGATGATGAGGACATTTCCTACCTTACTAACCGTGCCGCTGTTTACTTGGAAATGGGAAAGTTTGAGGAATGCATAAAAGATTGTGAAAAGGCTGTTGAAAGGGGAAGAGAACTGAGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCATTGGTCAAAATGGCTAAATGCTCTAAGGATTATGACCCTGCCATTGAAACTTTCCAGAAAGCACTCACAGAGCACCGCAACCCTGACACCTTAATGAAACTGCATGAAGCTGAAAAGTCTAAAAAAGAACTAGAGCAACAAGAATATTTTGATCCAAATTTGGCTGATGAGGAGAGAGAGAAAGGAAATGAATTATTTAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTATACAGAAGCTATAAAAAGGAACCCAAATGATTCTAAGGCTTACAGTAACAGAGCTGCATGCTATACAAAACTGGGGGCATTGCCAGAAGGTTTAAAAGATGCGGAGAAATGCATTGAGCTTGATCCAACCTTTTCAAAGGGTTATACTAGGAAAGGTGCAGTGCAATTTTTCATGAAAGAATATGACAAAGCTTTGGTAACATACCAGGAGGGGTTGAAACATGACCCTAACAATCAGGATTTGCTTGATGGCATTACAAGTTGTGTAGCACAAATTACTAAGGCTAGTCGTGGAGATTTTACTCCTGATGAGTTAAAGGAGAGACAGGCCAAGGCTATGCAAGACCCAGAGATACAGAGTATCCTCCAAGACCCTGTTATGAGACAAGTATTGGCTGATTTCCAGGAAAACCCCAGAGCTGCACAGGAACATACAAAGAATCCGATGGTGATGAACAGGATTCAAAAGCTGATCAGTGCTGGGATTGTCCAGATGAAATGA 1695 0.5074 MADEAKVKGNAAFSAGDFAAAVRHFTDGIAVAPSNHVLYSNRSAAHASLQNYGEALADAQKTVDLKPDWPKGYSRLGAAHLGLRRHRDAVSAYRAGLRLDPDNAALKSGLADAQAAASRPPPSNPFATAFSGPDMWARLTADPTARAYLQEPEFVRIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVKIQTPNDNNDEDASGDNDNDDDVSEEEEPEPEAKPEPEPEEENNTKVQAQKDKEAGNAAYKKKDFETAIGHYTKALEFDDEDISYLTNRAAVYLEMGKFEECIKDCEKAVERGRELRSDYKMIARALTRKGTALVKMAKCSKDYDPAIETFQKALTEHRNPDTLMKLHEAEKSKKELEQQEYFDPNLADEEREKGNELFKQQKYPEAVKHYTEAIKRNPNDSKAYSNRAACYTKLGALPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYDKALVTYQEGLKHDPNNQDLLDGITSCVAQITKASRGDFTPDELKERQAKAMQDPEIQSILQDPVMRQVLADFQENPRAAQEHTKNPMVMNRIQKLISAGIVQMK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0508 564 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Aed6g0508 564 Gene3D Tetratricopeptide repeat domain 374 488 IPR011990 GO:0005515
Aed6g0508 564 MobiDBLite consensus disorder prediction 225 246 - -
Aed6g0508 564 Pfam STI1 domain 133 186 IPR041243 -
Aed6g0508 564 Pfam STI1 domain 505 556 IPR041243 -
Aed6g0508 564 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Aed6g0508 564 MobiDBLite consensus disorder prediction 198 224 - -
Aed6g0508 564 SUPERFAMILY TPR-like 235 363 IPR011990 GO:0005515
Aed6g0508 564 Pfam Tetratricopeptide repeat 444 476 IPR001440 GO:0005515
Aed6g0508 564 Gene3D Tetratricopeptide repeat domain 233 369 IPR011990 GO:0005515
Aed6g0508 564 SMART CBM 513 552 IPR006636 -
Aed6g0508 564 SMART CBM 132 171 IPR006636 -
Aed6g0508 564 MobiDBLite consensus disorder prediction 191 246 - -
Aed6g0508 564 Gene3D - 122 190 - -
Aed6g0508 564 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Aed6g0508 564 Gene3D - 494 564 - -
Aed6g0508 564 Coils Coil 347 367 - -
Aed6g0508 564 PANTHER TPR REPEAT CONTAINING PROTEIN 1 563 IPR045248 GO:0006457|GO:0030544|GO:0051879
Aed6g0508 564 Pfam Tetratricopeptide repeat 272 298 IPR019734 GO:0005515
Aed6g0508 564 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Aed6g0508 564 Pfam Tetratricopeptide repeat 8 68 - -
Aed6g0508 564 Pfam Tetratricopeptide repeat 76 121 - -
Aed6g0508 564 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 563 - -
Aed6g0508 564 SMART tpr_5 2 35 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 311 348 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 70 103 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 36 69 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 236 269 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 375 408 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 270 303 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 443 476 IPR019734 GO:0005515
Aed6g0508 564 SMART tpr_5 409 442 IPR019734 GO:0005515
Aed6g0508 564 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
Aed6g0508 564 ProSiteProfiles TPR repeat profile. 375 408 IPR019734 GO:0005515
Aed6g0508 564 SUPERFAMILY TPR-like 374 487 IPR011990 GO:0005515
Aed6g0508 564 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
Aed6g0508 564 Pfam TPR repeat 382 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0508 Aed-Chr6 4346579 4350450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0508 1 99 U-box Gene Family AT3G07370 27.273 4.77e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0508 K09553 - gmx:100780296 945.651