Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0479 ATGAGTTTGCTTCATCTGTTGTGTCTGTTGGTTGCACTTCTTAGTACTCCTCCAGAGCTAGTTCATGGAAATGCAGAGGTGAGAGTTCTAATGGACTTGAAATCCTCTCTGGACCCAGAAGACAAGTTCCTTGGGTCGTGGAAGAGTGATGGTGATCCATGCAGTGGTTCTTTCTTGGGGGTTGTGTGCAACGAACACAACAAAGTGGCTAATATATCCTTGCCAGGAAGAGGTCTTTCTGGCAGTGTCTCTCCTTCTGTGGCTGAACTCAAATGCTTGTCTGGTTTATACTTGCATTACAATCATCTCTCTGGGTACATACCCAGAGAGATTTCAAATCTTGAGGAATTGCTCGATCTTTATCTCAACTTTAATAATTTATCCGGAACCATTCCTCCTGGTATCGGGAACATGACTAGTCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTAGAGGGGAACTTACCTGAGGAACTGGGTTCATTGAAGCAGCTTAATGCTCTTTCTTTGCAACATAACAAATTAACTGGTCAAATTCCTCAAAGCTTGGGTTACTTGAAGAAGCTAAGGAGGCTATATTTGAGCTACAACAACTTCAATGGCACGATACCTGCAGCACTAGCTGATATTGCAAACTTGGAAGTTCTAGATATTCAAAACAATTCCCTTTCAGGAACTGTTCCTTCTGCATTGAAGAGATTAAGGGAAGGATTCCAAGGTGCAAACAACCTAGGACTCTGTGGAGTTGGCTTTTCTACTTTGAAAGCTTGCAACAAAGATGAAATATTTGGCGTTAGTCAAATTAGTGCCCCAAATATATCAATGAACACAAATCCTCCAACAACTTTCCCAAAGCAAGCAAATACCCACTTGCATTGTAACCAGACCCATTGCTCAAAATCAAGAAGCTTTCTTCATCTTGTCATTGCAGCCAGTGTTACAACTACTGTTATCACATTCATAAGTTCTGGAATTTTCATATTTGTCAGATACCACCGCCAAAGGCAGAGGGTTAGGAACACATCAGATTATTCTGAAGGCCAACGTAGTCCTTACCAGCTTAAAGAGTTGCACAGAAGTTCATCTCCACTCGTTAATCTTGAGTATTATTATAATGGTTTTGATTCATTGGCTGATGGTCAAAATGAGAGTGGATTATCCCTTGAATATTTGAACCGTTTTAGATTCAACATTGATGAGATTGAATCAGCAACACAGCACCTTTCTGAGGCCAATTTATTGAGTAAGAGCAAATTCTCAGCTGTCTATAAAGGAGTTCTTAGAGACGGATCTTTTGTGGCTATTAGAAGCATTAGTGTGTCTTGCTGCAAAACCGAGGAAGGTGAGTTTTTGAAGGGGTTGAGCATGTTAACCTCACTGAGACATGAAAACATTGTTAAGATGAGAGGCTTCTGTTATTCAAGGAGTAGAGGTGAATGGTTTTTTGTCCATGACTTTGCCACCAGGGGTAATCTGTCTCAATACCTTGACAAGGAAGATGGAAGTGACTATGTAATTGAATGGTCCAAGAGAATTTCTATCATAAGGGGTATTGCAAAAGGTATTGGTTATTTGCACAACAATGAAGCAAGCAAGCCAACAATAGTACACCAAAACATTTCAGTTGAAAAAGTTATTCTAGACCATCAATTTAGCCCATTGATCTCAGATGCTGGCCTCCCAAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGCAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATCACTACTGGACGCTTTACTGAGAAAAGTGACATATATGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGAAAGGCATTGATAGGGGGTTCAATACGGGTGGCAGTTGAAGCTTTCAGATTTGAAGATTTTGTTGACACGAATCTGAAGGGAGATTATTCCAAATCTGAAGCTGCAATTCTTTCAAAGCTTGCAATTCAATGCACTCATGAAGTGCCGGAGCAAAGGCCAACCATGGTGGAGGTGATTCAAGAGCTGACCATGCTTCCTAATTCTCATTCTTCATGA 2049 0.409 MSLLHLLCLLVALLSTPPELVHGNAEVRVLMDLKSSLDPEDKFLGSWKSDGDPCSGSFLGVVCNEHNKVANISLPGRGLSGSVSPSVAELKCLSGLYLHYNHLSGYIPREISNLEELLDLYLNFNNLSGTIPPGIGNMTSLQVLQLGYNQLEGNLPEELGSLKQLNALSLQHNKLTGQIPQSLGYLKKLRRLYLSYNNFNGTIPAALADIANLEVLDIQNNSLSGTVPSALKRLREGFQGANNLGLCGVGFSTLKACNKDEIFGVSQISAPNISMNTNPPTTFPKQANTHLHCNQTHCSKSRSFLHLVIAASVTTTVITFISSGIFIFVRYHRQRQRVRNTSDYSEGQRSPYQLKELHRSSSPLVNLEYYYNGFDSLADGQNESGLSLEYLNRFRFNIDEIESATQHLSEANLLSKSKFSAVYKGVLRDGSFVAIRSISVSCCKTEEGEFLKGLSMLTSLRHENIVKMRGFCYSRSRGEWFFVHDFATRGNLSQYLDKEDGSDYVIEWSKRISIIRGIAKGIGYLHNNEASKPTIVHQNISVEKVILDHQFSPLISDAGLPKLLADDVVFSALKASAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKALIGGSIRVAVEAFRFEDFVDTNLKGDYSKSEAAILSKLAIQCTHEVPEQRPTMVEVIQELTMLPNSHSS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0479 682 PANTHER LEUCINE RICH REPEAT RECEPTOR KINASE 19 674 - -
Aed6g0479 682 SUPERFAMILY L domain-like 26 234 - -
Aed6g0479 682 PANTHER OS01G0253100 PROTEIN 19 674 IPR045271 GO:0004714|GO:0006468
Aed6g0479 682 Gene3D Phosphorylase Kinase; domain 1 376 486 - -
Aed6g0479 682 ProSiteProfiles Protein kinase domain profile. 408 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0479 682 Gene3D Ribonuclease Inhibitor 174 246 IPR032675 -
Aed6g0479 682 SUPERFAMILY Protein kinase-like (PK-like) 383 676 IPR011009 -
Aed6g0479 682 Gene3D Transferase(Phosphotransferase) domain 1 488 678 - -
Aed6g0479 682 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515
Aed6g0479 682 Gene3D Ribonuclease Inhibitor 23 173 IPR032675 -
Aed6g0479 682 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
Aed6g0479 682 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Aed6g0479 682 SMART LRR_typ_2 114 137 IPR003591 -
Aed6g0479 682 SMART LRR_typ_2 186 209 IPR003591 -
Aed6g0479 682 SMART LRR_typ_2 138 162 IPR003591 -
Aed6g0479 682 SMART LRR_typ_2 210 233 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0479 Aed-Chr6 4136274 4139894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0479 6 521 Miscellaneous Gene Families AT4G22730 54.563 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Aed6g0479 PK_Tyr_Ser-Thr 2.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0479 - - gmx:100784155 1173.69