Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0459 ATGCAAGAAGCCGGCGGCGGGTTGGGAATGATGAGCGGAGAACTGTCAGGCCTGAAGGCGGAGATAGCCACACACCCTCTCTATGAACAGCTTCTGGCTGCACACGTCTCATGCCTCCGCGTGGCCACACCCATCGATCAGTTGCCACTCATCGACTCTCAGTTATCGCACTCCCACCATCTCCTCCGCTCTTATGCCTCACACCATTCTCATTCCCTCTCACCCCATGACCGACAACAACAACAACTTGACAACTTCATGGCACAATATTTGATTGTGTTGTGTACGTTCAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGGGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCTTATGGATGGGTCTTTAGACCAATCTAGCGCTGAGGGGCATGACATGATGGGATTTGGCCCATTGCTTCCTACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAAGAGCTTAAGATTGAGCTCAAGCAGGAAGATGACAAGGCAAAACTTGTGGAGGACACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCAGTTACCTCTCTGAAGTCCAAGCGCAAGAGAAGAGACAGCAGAAATCTAGCCTTACTGCCTTCTCTTCTCTCGATGGGCTTCCCTGCCAACGGCGCCTCCGCGGCCCAGCCCCTCAACTTCCTCATCTACGGCCGCACGGGCTGGATTGGCGGCCTCCTGGGCTCCCTCTGCCGGGCCCAGTCCATCCCCTTCCAGTACGGCTCCGGCCGCCTCGAGAACCGGGCCTCCCTCGAAGCCGACATAGCCCAAGTCAAGCCCACCCACGTCTTCAACGCCGCCGGCGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGTCCCACAAAGTCGAGACCATTCGAACCAACGTCGTCGGAACCCTCACTCTCGCCGACGTCTGCCGCGACAACGGCCTGATCCTCATCAACTACGCCACCGGCTGCATCTTCGAGTACGATCCCGATCACCCCCTCGGATCCGGATTCGGCTTCAAAGAAACAGACACTCCCAATTTCATCGGTTCTTTCTATTCCAAGACCAAAGCAATGGTAGAGGATCTGCTGAAGAACTACGACAATGTGTGTACGTTGCGAGTGAGGATGCCAATCTCGTCTGATTTATCGAACCCGCGGAACTTCATAACTAAGATCACGCGATACGAGAAGGTTGTGGACATTCCGAATTCGATGAGTATATTGGATGAGCTGCTTCCAATCTCCATAGAGATGGGGAAGAGGAACCTAACTGGGATCTGGAACTTCACGAACCCTGGAGTGGTTAGTCACAACGAAATCTTGGAGATGTACAGAGAATACGTTGACCCCGACTTCACCTGGAAGAACTTCACTCTCGAGGAACAGGCCAAGGTCATTGTTGCTCCCAGGAGCAACAATGAGCTTGACGCCTCGAAATTGAATAAGGAGTTTCCGGAGCTGTTATCTATTAAGGAGTCTCTCGTTAAGTATGTCTTCGAGCCAAACCAGAAGGTTAAAGCTTAA 1656 0.5242 MQEAGGGLGMMSGELSGLKAEIATHPLYEQLLAAHVSCLRVATPIDQLPLIDSQLSHSHHLLRSYASHHSHSLSPHDRQQQQLDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLLMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQEDDKAKLVEDTGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRRDSRNLALLPSLLSMGFPANGASAAQPLNFLIYGRTGWIGGLLGSLCRAQSIPFQYGSGRLENRASLEADIAQVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDNGLILINYATGCIFEYDPDHPLGSGFGFKETDTPNFIGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMSILDELLPISIEMGKRNLTGIWNFTNPGVVSHNEILEMYREYVDPDFTWKNFTLEEQAKVIVAPRSNNELDASKLNKEFPELLSIKESLVKYVFEPNQKVKA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0459 551 Pfam KNOX1 domain 18 59 IPR005540 GO:0003677|GO:0005634
Aed6g0459 551 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 255 547 - -
Aed6g0459 551 Gene3D - 257 551 - -
Aed6g0459 551 SMART KNOX1_2 16 60 IPR005540 GO:0003677|GO:0005634
Aed6g0459 551 SMART KNOX2_2 71 128 IPR005541 GO:0003677|GO:0005634
Aed6g0459 551 CDD dTDP_HR_like_SDR_e 266 538 - -
Aed6g0459 551 Pfam KNOX2 domain 79 127 IPR005541 GO:0003677|GO:0005634
Aed6g0459 551 Pfam RmlD substrate binding domain 267 438 IPR029903 -
Aed6g0459 551 Gene3D - 167 235 - -
Aed6g0459 551 ProSiteProfiles 'Homeobox' domain profile. 192 223 IPR001356 GO:0003677
Aed6g0459 551 SMART HOX_1 171 227 IPR001356 GO:0003677
Aed6g0459 551 Coils Coil 175 202 - -
Aed6g0459 551 PANTHER BNAC05G13120D PROTEIN 255 547 - -
Aed6g0459 551 Pfam Homeobox KN domain 192 219 IPR008422 GO:0003677|GO:0006355
Aed6g0459 551 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 264 542 IPR036291 -
Aed6g0459 551 CDD homeodomain 182 224 IPR001356 GO:0003677
Aed6g0459 551 SUPERFAMILY Homeodomain-like 192 229 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0459 Aed-Chr6 4005206 4013499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0459 1 236 Homeobox Transcription Factor Family AT1G62990 61.824 2.55e-112 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0459 K12451 - gmx:100781643 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0459 6 4005206 4013499 Aed6g0459 6 4005206 4013499 ECH
Aed6g0459 6 4005206 4013499 Aed11g1682 11 20543923 20551116 PCT