Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0449 ATGGAGAACAATATGTACAGTGTTCCTGTCATAGAAGAATTTGCACAGCATTTAGCACCAAAGCCACTGATTCATTGCTATTCATTTGACCTCAATAACCAAAACCACATCATAAATGGAATTCCGGTACTTGCTGGAGATCAAGGTGAACCTACAAGAGATGGTTGCTTCATGAATCCTGCTAATATTGTTGATTCCAATTCATTTGTCACATCAAAAGGAAAGACTACTGTAGGAAATGCCTCAATTCCCATTAACAACAATGACTTTGAAGGGCATTTGGTTGGAGGAAGGCCAATTGCTTCTGCTTCACTTGCTGCTAGAATTGGCCTTCAAGAAAATCTAGAGAGTTCAGCAGCTTTGTCACCTTCAATGTGTTCATTGGAGGCATTGGGACCATACATCTTCAATAATTGGCAGGACACATCAAACTTTTTGCCTGCAACATTTGGTGGTCATGCCTATGATGAATTACCAGGTATTGGTAAGTGGAATGTGAACAAAATTGTGAAAGCTCCAGAGGCAGATAGGACTGAAATACTGGCTTATTCATCCATGGGAAACCTGATTCAAAATGGATGGGCATCATCAAATGTTGCAAACTTGGCCAGTTTTGCCTACAATTCCTCTAATTGTAGTAATGAGCTATCACTAAGTCTTGCAAGATCTTCTCAAACTACAGGTCAGTGCTCCGACATGAGCTGCTCGGATGCATCGCATAACATGAATGGAACAACAAGGTCAGGCTTGGAGCAACCCTCCTGCAACAGTAAGGATCTGTCCGTGAGATTTGGTTCTAACAAACATGTCCGGTTTTCACCGGCTGTATTCGAGTCCAGATATCTTTCTGGGATTCAAGAGATTCTTGCTCAAATTGCAACATATTCATTTGAAAATGTAGAACAGATAAATTACTCAGCTGCTGGTGTTAGAGCTGATGGAAATAAGTCATCTTCAGTTTTCTCACAGAAGAGGGATGTAGCATTAAATCATAATGCAAATTCCATGTTTGGAGCACATGTAGAAGAATCTCCATTGGAAAGACATGCAACTGAATCAAACAAATCCCAACTTCTCATGCTTCTACAGCTGGTGGACAATGGATATAGTCAGTGTTTGGATGAGATTCATACTGTGATATCTGCATTCCATGCTGCTACTGAGCTGGATCCACACATGCATGCACATTTTGCGCTTCAAACGATCTCTCTCTTATACAAGGACTTGAGAGAGAGGATTAGCAATTGTATTCTTGCCATGGGACCGGATTTTAACGGTAGTTTGTGTTCAGAAGAGAAGGAATGGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACAAGAAGCCAGGGAGGAACAATCTGCTATGAAGAATTTCAACCTTATAGAAAGCGAAAAAAAACAAATAGCAAACATCTTGTTATCATTGATGATGATTTTGAGCTGTGTTTATGGTTGATTGAGCAGGTATCCAATTGGTTTATCAATGCGCGAGTTCGACTATGGAAGCCTATGATTGAGGAAATGTATGCTGAAATTAGTAGAAGAAAAGCTTGTAGAAATGAAGATGGAATGGAGATCACTCAGAGAAGCAGGATAAGCATGAACAATCAAATGTTGAATATTAATTGA 1647 0.3977 MENNMYSVPVIEEFAQHLAPKPLIHCYSFDLNNQNHIINGIPVLAGDQGEPTRDGCFMNPANIVDSNSFVTSKGKTTVGNASIPINNNDFEGHLVGGRPIASASLAARIGLQENLESSAALSPSMCSLEALGPYIFNNWQDTSNFLPATFGGHAYDELPGIGKWNVNKIVKAPEADRTEILAYSSMGNLIQNGWASSNVANLASFAYNSSNCSNELSLSLARSSQTTGQCSDMSCSDASHNMNGTTRSGLEQPSCNSKDLSVRFGSNKHVRFSPAVFESRYLSGIQEILAQIATYSFENVEQINYSAAGVRADGNKSSSVFSQKRDVALNHNANSMFGAHVEESPLERHATESNKSQLLMLLQLVDNGYSQCLDEIHTVISAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNGSLCSEEKEWYPKDAEKHLLAIKSGLTRSQGGTICYEEFQPYRKRKKTNSKHLVIIDDDFELCLWLIEQVSNWFINARVRLWKPMIEEMYAEISRRKACRNEDGMEITQRSRISMNNQMLNIN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN ATH1 494 544 - -
Aed6g0449 548 Pfam Homeobox KN domain 436 505 IPR008422 GO:0003677|GO:0006355
Aed6g0449 548 Gene3D - 329 515 - -
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 436 455 - -
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 433 - -
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN ATH1 436 455 - -
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN ATH1 11 433 - -
Aed6g0449 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 494 544 - -
Aed6g0449 548 Pfam Associated with HOX 276 414 IPR006563 -
Aed6g0449 548 SMART prehox3 270 415 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0449 Aed-Chr6 3924069 3926638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0449 214 522 Homeobox Transcription Factor Family AT4G32980 39.944 3.48e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0449 - - gmx:100812648 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0449 6 3924069 3926638 Aed6g0449 6 3924069 3926638 ECH
Aed6g0449 6 3924069 3926638 Aed4g1634 4 21031617 21033700 PCT