Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0428 ATGAGTTTTCATGACACATCAAACACAGGGCTTGGTCTTGGACTTGGTCTTGGTCTTGGTTTTGTAAGCTTCCATGATCAACCAGAGAGCTGCATGAAGAGTGATGATCACCCCTTATTGAGAGAAAGCCTTAAAATGATAAAAAAGGTGGCGGAGAATCCATCAAAATGTAACAAGACATATCCTTCACTTACATTAGGACCACCAGATGATGACAACGACGGCGATGATGATGATGATGAAGTGAATAATAATAATAATGATCAACCAAGTTCAAAGACTGATGAGTCCTATGAGTATCTTCATCCTGGCCAAGTTTCTTCTCATAGTGCTGTTTCTTCATTTTCCAACTCTTCTAGCATCAAGAGGGAGCGAGATATTCAAGTGCTAGGAGAAGAATTTGAGGTTGAGATAGAGAAAGTTCCAACAAGGGTTGATGATGTTGTTGATGAAGATGGTAACACCAGAAAGAAACTTAGGCTCACTAAAGAACAAGCTGCAGTATTGGAGGAAAATTTCAGAGACCATTCTACACTCAATTCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGGACGAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGTCAGATTGTGAAGTATTGAAGAAGTGTTGTGATACTCTAACAGAAGAAAACAAGAGGCTGCAAAAGGAACTGCATGAACTAAAGTCAATGCAATTAGCAACAACACCAGTGCCACTTTATATGCAGATTCCAGCAGCAGCCACACTTTCGATATGCCCTTCGTGTGAGAGAATCTGCGGTGCCAACAATAACAACGTTAACAGTGACAATAGCAACAACAATGGCTCTTCACACACGACAACGTTGCTTATTGGCTCAAAGGCACATCATCATCCCTTTTACAAAAGTAGTAACAACTATCCATTCCCCCACTCATCTTCCGCAGCATGCTAG 978 0.4141 MSFHDTSNTGLGLGLGLGLGFVSFHDQPESCMKSDDHPLLRESLKMIKKVAENPSKCNKTYPSLTLGPPDDDNDGDDDDDEVNNNNNDQPSSKTDESYEYLHPGQVSSHSAVSSFSNSSSIKRERDIQVLGEEFEVEIEKVPTRVDDVVDEDGNTRKKLRLTKEQAAVLEENFRDHSTLNSKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCEVLKKCCDTLTEENKRLQKELHELKSMQLATTPVPLYMQIPAAATLSICPSCERICGANNNNVNSDNSNNNGSSHTTTLLIGSKAHHHPFYKSSNNYPFPHSSSAAC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0428 325 Pfam Homeobox associated leucine zipper 212 245 IPR003106 GO:0006355|GO:0043565
Aed6g0428 325 Pfam Homeodomain 156 210 IPR001356 GO:0003677
Aed6g0428 325 SMART halz 212 258 IPR003106 GO:0006355|GO:0043565
Aed6g0428 325 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 323 - -
Aed6g0428 325 MobiDBLite consensus disorder prediction 55 98 - -
Aed6g0428 325 CDD homeodomain 156 213 IPR001356 GO:0003677
Aed6g0428 325 Gene3D - 149 219 - -
Aed6g0428 325 SUPERFAMILY Homeodomain-like 150 213 IPR009057 -
Aed6g0428 325 PANTHER - 3 323 - -
Aed6g0428 325 ProSiteProfiles 'Homeobox' domain profile. 152 212 IPR001356 GO:0003677
Aed6g0428 325 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
Aed6g0428 325 Coils Coil 211 245 - -
Aed6g0428 325 SMART HOX_1 154 216 IPR001356 GO:0003677
Aed6g0428 325 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0428 Aed-Chr6 3758432 3760964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0428 1 273 Homeobox Transcription Factor Family AT4G37790 45.357 5.03e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed6g0428 Homeodomain 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0428 K09338 - gmx:100797650 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0428 6 3758432 3760964 Aed6g0428 6 3758432 3760964 ECH