Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0427 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAATTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGTTGCGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAGACATGGTGGTTTCTCCGAAGAAGAAGACAACATTATCTGCAGCCTCTACGTCAGTATTGGAAGCAGAACGGACAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTGGGGAAGCACCGAAGAGAGCCACGTAATAGAGGCAACTACAACAGTGTTATTAAGCAAGAAAGTGATGTTAATAGAGGGAGTAGAAGTGATTGTGATGATTCTTCTTCCTTATCCTTGGTTCAGGAAAATAGTAACATTACTCAGCAACCATGTTGGCCACAGAATATTAATAACATGCCTATGTTACCACTTGCATTGCCCTTGCCATACACAGACCAAGGTCCATGTTTCAACGACCAAGATTCTATTAAGAAACTCCTTATCAAACTCGGAGGAAGATTTTCAGGTGATTATTACCATCCTACCCTTGATGGGTTGAACCTTCAATTCTCATCAGATGGGCAACAAGTTTACCAACAACAAGTCCATCTTGGCTCTTCTTCTTCTGCTTCTGCTTGCATTAGTGCCACTATTAACAACAACAACAACAATGAGGTAGTACAATTTGCACAAACCGGTGGTCAATACTCTGGAGTTGATCATAACTTGGTGCAAGGGCAAGGTGGTAATTTCACTCCATCTTTTGAGGAAATGGTGTCTTCTTCAAATTATCCAGATGGGTTGGAGTTCTTGTATAATGAGGGCATGATCGACCATAAGATAATTGACACTACTACTACAACCACAAACTGGGGTGAAACTAGCACCATTTATCAACATCATTCAGCACTTGCTTCCAATTACCAAGGTCAAGGTGTGACACAAGATTTTAGCTACCCCGGGGTACAATAA 1053 0.4245 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYVSIGSRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVIKQESDVNRGSRSDCDDSSSLSLVQENSNITQQPCWPQNINNMPMLPLALPLPYTDQGPCFNDQDSIKKLLIKLGGRFSGDYYHPTLDGLNLQFSSDGQQVYQQQVHLGSSSSASACISATINNNNNNEVVQFAQTGGQYSGVDHNLVQGQGGNFTPSFEEMVSSSNYPDGLEFLYNEGMIDHKIIDTTTTTTNWGETSTIYQHHSALASNYQGQGVTQDFSYPGVQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0427 350 Gene3D - 84 132 - -
Aed6g0427 350 SUPERFAMILY Homeodomain-like 11 98 IPR009057 -
Aed6g0427 350 Gene3D - 7 68 - -
Aed6g0427 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Aed6g0427 350 PANTHER OS09G0431300 PROTEIN 1 336 - -
Aed6g0427 350 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 336 - -
Aed6g0427 350 MobiDBLite consensus disorder prediction 108 143 - -
Aed6g0427 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed6g0427 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed6g0427 350 SMART sant 67 104 IPR001005 -
Aed6g0427 350 SMART sant 13 64 IPR001005 -
Aed6g0427 350 CDD SANT 16 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0427 Aed-Chr6 3740446 3742124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0427 1 196 MYB Transcription Factor Family AT3G49690 56.522 7.45e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed6g0427 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0427 K09422 - gmx:100800290 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0427 6 3740446 3742124 Aed6g0427 6 3740446 3742124 ECH
Aed6g0427 6 3740446 3742124 Aed4g1617 4 20906480 20907703 PCT