Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0401 ATGAATTTTTTTCATCCATCTAAGGATAAAAAAGATGAATTTGAAGCTGGTGTTGTGGATCTGAAGGTGATGATTGAGGAGCTGGACTCAATAGATGTGCCTTCTGTGTTCATCTGTCCAATTTCCCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACCGGTCAAACCTACCACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACATGTCCCACGACAATGCAAGAGCTTTGGGACGATGCTGTCACACCCAACAGCACCCTCTCCCACTTGATCCTCACTTGGTTTTCTCAAAAGCACTTGGCCATGAAGAAGAGGCTCGAGGATGTTCAAGGAAGAGTCTTTAACCTATTGGACACTCTCAAGAAGGTGAAGGGTCAAGCCAGGGTTCGAGCACTTCAAGATCTAAGGATACTTGTGGCTTCTCATGTCAATGCAAGGAAGACACTTGAGGAGAATGGTGGTGTTGCTTTGGTTTTTAATTTGTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCTGAAGCTATTGGGATCATGGTGTGTTTGGATTTGAGTTCTGAGGTGAAGGGTAGTCTCATGCATCCTGCTAAGGTTTCTTTGTTGGTGGATATCATGAATGAGGGAACCATCGAGACAAAAATGAACTGTGCCAAATTGATTGAGATGTTGTTGTTGATGGAAGGGAATGATAATGATAATAATGAGAATGAGATTGTTTCAAGTTTGAGTCTTTTAGTTGGGTTATTGAGGCTAGTGAGGGATAAGAAACACCAAAATGGTGTCTCAATTGGTCTCATATTACTCAAGGCTATCATATGTTCTCATGAATCAGTTAGAAGCTCTTTGATAAGCCTAGGAGCAATTCCTTTATTGATTGAGCTTTTGCCTAGTTTGAACAATGAGTGCTTGGAGAAAGCGCTCTACATTCTTGAGGTGTTGTCAACACTTCAAGAGGGGAAAATGGCTTTGAAGGAATGTCCAAATATCATTCCCAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGCTGCACACAGTTGGCAGTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAGGAATGTGCCTCACAGGCTGTAGAGGCAGGGTTGGCTGCAAAGCTTCTGTTGGTGATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTGTGAGTTTTTGAAAATGTGCAGTCTCAATTACTCAACTAGCATCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1272 0.43 MNFFHPSKDKKDEFEAGVVDLKVMIEELDSIDVPSVFICPISLEPMQDPVTLCTGQTYHRSNILKWFSLGHKTCPTTMQELWDDAVTPNSTLSHLILTWFSQKHLAMKKRLEDVQGRVFNLLDTLKKVKGQARVRALQDLRILVASHVNARKTLEENGGVALVFNLLGPFTSHAVGSEAIGIMVCLDLSSEVKGSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLLMEGNDNDNNENEIVSSLSLLVGLLRLVRDKKHQNGVSIGLILLKAIICSHESVRSSLISLGAIPLLIELLPSLNNECLEKALYILEVLSTLQEGKMALKECPNIIPNVVKLLMRVSESCTQLAVSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSCEFLKMCSLNYSTSILVSKCMLTTTIQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0401 423 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Aed6g0401 423 SUPERFAMILY RING/U-box 27 106 - -
Aed6g0401 423 PANTHER WDSAM1 PROTEIN 16 422 IPR045185 GO:0061630
Aed6g0401 423 CDD RING-Ubox_PUB 37 79 IPR045210 -
Aed6g0401 423 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Aed6g0401 423 SUPERFAMILY ARM repeat 244 406 IPR016024 -
Aed6g0401 423 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Aed6g0401 423 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 422 - -
Aed6g0401 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 115 IPR013083 -
Aed6g0401 423 Coils Coil 137 157 - -
Aed6g0401 423 Gene3D - 117 415 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0401 Aed-Chr6 3459597 3460868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0401 19 423 U-box Gene Family AT3G49810 63.704 0.0 518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0401 6 3459597 3460868 Aed6g0401 6 3459597 3460868 ECH