Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0344 ATGGCGCAGATTCAGGTGCAGCATCAGAGTCCGGTGTCGGCTCCTCCCAACGGCGTGGCTAACGCGCCGAACGCGAACCAGTTCGTGACGACGTCGTTGTACGTTGGCGATCTTGACCAGAATGTCAACGACTCTCAGCTCTACGATCTCTTCAACCAGGTCGGCCAAGTCGTTTCGGTGCGCGTCTGCAGGGACTTGACGACGCGTCGTTCACTCGGTTATGGCTATGTTAATTTCAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTTAACAACAGATCTATTAGGATCATGTATTCTCATCGGGATCCTAGTATTAGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATCGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGCCTGTCTAAGGGCTATGGTTTTGTTCAATTCGACAATGAAGAGGCTGCACAGAATGCTATTGACAAGTTAAATGGCATGCTGATTAATGATAAGCAGGTCTATGTAGGCCATTTCCTGCGAAAGCAAGATAGAGACAATGCTCTCAGTAAGACAAAATTTAATAATGTCTATGTGAAAAACCTATCAGAATCAACCACGGATGAAGAGTTGATGAAATTTTTTGGAGAATATGGTACCATTACTAGTGCTGTAATAATGAGAGATGCAGATGGTAAATCAAGGTGTTTTGGCTTTGTCAATTTTGAGAGCCCTGATGATGCTGCCAAAGCTGTTGAGGGACTTAATGGTAAGAAAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACAAGAACTTAAAGGACGATTTGAGCAGAGTATAAAGGAAGCTGCTGACAAATATCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACTCTCAGTGATGAGAAACTCAAGGAAATGTTCACTGAGTATGGTACAATAACTTCATGCAAGGTTATGCGAGACCCCAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTAGAGCTCTCGGTGAGATGAATGGTAAAATGATTGCTGGAAAACCTCTGTACGTTGCCCTTGCACAGAGAAAGGAAGATAGAAGAGCAAGGTTACAGGCTCAATTTTCACAGATGAGGCCTGTTGCTATTACGCCTTCTGTTGCGCCCCGTATGCCTCTCTACCCTCCTGGTGCTCCTGGTCTTGGACAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCTGGAATGAGACCTGGGGGTGGTCCCATGCCAAGCTTCTTTGTTCCTATGGTTCAGCAGGGTCAACAAGGGCAGCGCCCAGGGGGCCGCCGAGGAACAGGTCCAGTGCAACAACCCCAACAGCCAATGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGGGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCAAGGTGTAGCTGGTGGAATGATGTCTGTCCCTTATGACATGGGTGGTCTGCCAATCCGTGACGCTGTGGGTCAACCAATGCCCATTCAGGCTTTGGCTACAGCCCTCGCAAATGCTCCAGCTGATCAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGCTTGTGGATCAGCTAGAGCATGATTCGGCAGCAAAGGTTACAGGGATGCTTCTGGAGATGGACCAGCCTGAAGTTTTACATCTGATTGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTTCTCAGCAAACCAACCCAGCTGATCAACTAGCCTCGCTCTCTCTCGGTGACAATCTTGTGTCTTAG 1950 0.4692 MAQIQVQHQSPVSAPPNGVANAPNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFESPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYQGVNLYLKNLDDTLSDEKLKEMFTEYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDMGGLPIRDAVGQPMPIQALATALANAPADQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQTNPADQLASLSLGDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0344 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Aed6g0344 649 CDD RRM4_I_PABPs 312 390 - -
Aed6g0344 649 CDD RRM2_I_PABPs 117 193 IPR045305 -
Aed6g0344 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Aed6g0344 649 SUPERFAMILY PABC (PABP) domain 495 639 IPR036053 GO:0003723
Aed6g0344 649 Gene3D - 119 193 IPR012677 -
Aed6g0344 649 Gene3D - 549 632 - -
Aed6g0344 649 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g0344 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Aed6g0344 649 SMART poly_2 565 628 IPR002004 GO:0003723
Aed6g0344 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Aed6g0344 649 SMART rrm2_1 211 283 IPR003954 GO:0003676
Aed6g0344 649 SMART rrm2_1 314 386 IPR003954 GO:0003676
Aed6g0344 649 SMART rrm2_1 120 192 IPR003954 GO:0003676
Aed6g0344 649 SMART rrm2_1 32 105 IPR003954 GO:0003676
Aed6g0344 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Aed6g0344 649 PANTHER RNA BINDING PROTEIN 20 635 - -
Aed6g0344 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Aed6g0344 649 PANTHER POLYADENYLATE-BINDING PROTEIN 20 635 - -
Aed6g0344 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Aed6g0344 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Aed6g0344 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Aed6g0344 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Aed6g0344 649 Gene3D - 194 300 IPR012677 -
Aed6g0344 649 Gene3D - 1 118 IPR012677 -
Aed6g0344 649 Gene3D - 301 403 IPR012677 -
Aed6g0344 649 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Aed6g0344 649 CDD RRM1_I_PABPs 32 111 - -
Aed6g0344 649 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Aed6g0344 649 MobiDBLite consensus disorder prediction 475 500 - -
Aed6g0344 649 SUPERFAMILY RNA-binding domain, RBD 210 393 IPR035979 GO:0003676
Aed6g0344 649 SMART rrm1_1 211 283 IPR000504 GO:0003723
Aed6g0344 649 SMART rrm1_1 314 386 IPR000504 GO:0003723
Aed6g0344 649 SMART rrm1_1 32 105 IPR000504 GO:0003723
Aed6g0344 649 SMART rrm1_1 120 192 IPR000504 GO:0003723
Aed6g0344 649 CDD RRM3_I_PABPs 209 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0344 Aed-Chr6 2979137 2983779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0344 1 643 Eukaryotic Initiation Factors Gene Family AT4G34110 67.742 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0344 K13126 - gmx:100784442 1132.47