Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0324 ATGAAGCAGCAGCACCCTCAACTCCACAACTTGTCAAACGAGGAAAATGACAATTTTGCCTTTTATGGTCAGGTCAGGGTTCACTCCAAAATCCTTCACAACAATGGTGCTATCACCAACCCCACTATTCTTTCTCCATATTCTTCTTCACTTTCAGTGCCTTATGTTTCTAACTACCAGCAACAATCAGCTCCATCCCCAATTTCTTCATCTGGAAACAGAATAAGCCCTGCAATTCTTTTCATCATAGTGATTTTAGCTGTGGTATTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCAAAGGTCTTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCTGATTCAGACACTTACCAGAGACAATTACAGCAGCTATTCCATCTCCATGACTCAGGTCTGGATCAAGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATTGGCTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTATTGGAACAAGACAAGTTGAGACTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGCTGTTGTCAAATTCAACTTGCCCTCTCTGTAGAGGGTCTCTCTATTCAACAGGCTTTGCCTTTGAGAACTCAGTTTTTGACTTTGAAAGTCAACAACTTGAGGAAGATGGGGTAGTTGGGGTTGGTTCTGTTAACAACAAAGCTGCAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCAGTTAGGCTTGGAAAATTTAGAAGCACTAATAGTAATAATAATCATCATCAAGATGGGGTGGTGGTGGAGAGAGGTGAAGGAGAGAGTAGTAGTGTTAATTTGGATGTGAGGAGATGCTATTCAATGGGTTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTAACACTGGTGGAAGTATGAGACAACTGAAGGGAAGAGCAGCCACAAATGGAAGCTCTTTCGTTGATGGGGATGTTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGACAGGTTCATCAGATGCTCATTTCCATAATTCTACTGTCAATTCAACTTTGCCATGGATGATGAATAAAGCCAGAGGTACTTGA 1206 0.4104 MKQQHPQLHNLSNEENDNFAFYGQVRVHSKILHNNGAITNPTILSPYSSSLSVPYVSNYQQQSAPSPISSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLIKQRSSSNSSISQSNRYPDMSDSDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCELLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGSLYSTGFAFENSVFDFESQQLEEDGVVGVGSVNNKAAESHIVNGKRVFSVRLGKFRSTNSNNNHHQDGVVVERGEGESSSVNLDVRRCYSMGSFQYVVADSDLRVALGPNTGGSMRQLKGRAATNGSSFVDGDVEGKKINIARKGESFSVSKIWQWSRKDKLTGSSDAHFHNSTVNSTLPWMMNKARGT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0324 401 SMART ring_2 169 210 IPR001841 -
Aed6g0324 401 SUPERFAMILY RING/U-box 148 216 - -
Aed6g0324 401 CDD RING-H2_PA-TM-RING 168 211 - -
Aed6g0324 401 Pfam Ring finger domain 168 211 IPR001841 -
Aed6g0324 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 26 394 - -
Aed6g0324 401 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Aed6g0324 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 217 IPR013083 -
Aed6g0324 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0324 Aed-Chr6 2846611 2848362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0324 68 378 C3H Transcription Factor Family AT2G18650 41.228 2.90e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0324 - - gmx:100805154 594.734