Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0315 ATGATCCGAAACAGAAACGGGTCGGATCGCCGGATTCTAACCTCCCCGGCGGTTCATCCATGTGAAAACATCGCTCCCTCTATTCTTTTCCCTTCACTCATCACTCTCTCCAACGCCATTTCCACTTTCCAACACAGTTTCTTCCCTTGCAACAACCGAAACGCGAGAAACGCGATTCGCTTCACCCGTCTTCTCCAACCTTTCCTTCATGAGCTCCGAGACCACCATTCGGGTCTACCCGACTCGGTATCCCTGAGTCTCTCGGAGCTTCATTTAACCTTCCAGAAGTTTCTTTTCCTTCTTGAAGATCTCTCCCGTGAAGGTGCGAAACTCTACTTGTTAATGGAGTCAGATCGGGTCGCTACTCAGTTTCGGGTCATATCCAGATCCGTCGCCACTGCTTTGGACGTTTTTCCTTTCGGTTCCGTGGAGATCTCTGAGGAAACTAAAGAGCATGTTTTGCTGCTGAATGAGCAAGCGAGGAGGGCCAGGTTTGAATTTGAGCAAGAAGATAAACGGGCTGTGATGAGCGTTGTGTCGGGTTTGACCCGGTTTGAGAACCGGGTTGCTCCCGATGAGGGTGATTTGAAGTGGGTTCTTGAATATATTGGGGTTAAAAAGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGACTGCTTGAAGAATGAGAAGAGAAAGATGGGTTTTTTGAGTAGTTTGATGAGGTTCATGAGTTATTGTAGATGTGTGGTGATGGAAGTTGTTGATTGTGAAGAGAGGAGCAAAAAAAATGATGGAAGAAGAGAAAGTAGTGTTGAAAGTGAGATGAGTCTTAGTTTGAGTTTTCTTAACTCAGATGATTTTAGATGTCCAATCACTTTGGAGTTGATGAGTGATCCTGTGACAATAGAAACAGGTCATACTTATGATCGTTCTTCGATTTTAAAGTGGTTCAGTAGTGGGAATTCGATGTGTCCCAACACGGGTAAAAGGCTTAGCAGCACTGAGATGGTTCCAAACATGGTGCTTAGAAGGTTGATTCAGCAATACTGCTATGCAAATGGCATAAGCATTCCCTTTGTTGATTTGGGTCGTAGGAATCGCGAGATTACTAGGAAAGTGGAGCCTGGGAGTGTGGCAGCAGAGGGAGCAATGATAATGCTGGCTTATTTTTTGAATGGAAAGATTGAGAATGGAAATGGAGAAGAGAAGAATAGAGCTGCATTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAGTAGGTCTTGTTTGGTTGAAGCTGGTTTGGTTCCTCTTCTGTTGAAGTTGTTGTCGTCGAGCGAGTCGTTGACTCAAGAGAATGCTGCTGCAGCCCTTCTCAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGTTTGGAATTGATTGTTGAGGTCTTAAAGAAGGGGCTAAAGCTTGAAGCTCGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTCCTGAGTATGGGAACTTGATAGGTGAAGAGCCAGAAGCAATTCCATCACTGATAAGGCTAATCAAAGATGGTTCTTATCGAAGCAAGAAAAATGGTTTGGTTGCGATTTTCAGCCTTCTTAAGCACCCGGAAAATCATAGAAGGGTGCTCGAAGTTGAAGGTGGAACAGTTCCTTTGCTAGTTGAGATCCTAAAAGGGTGTGAAAAGGAAGACATTATCACAGACTCACTTGCAATTCTAGCAACTCTGGCAGAAAGAAATGAGGGAATGTTAGCAATACTTGAAGGAGAGGCTTTACAAGTAGCTGTTGAAATTTTCAGTTGTTCCAGTTCAAGGGTGGGGAAAGAGCATTGTGTGGCTTTGTTGCTTTCTTTGTCACTAAATGGTGGAGAAGATGTGGTTGCTTATTTAGTGAAGAGCCCTTCTCTTATGGGATCTTTGTATTCCCAACTCAGTGAAGGCACATCTAGAGCAAGCAAGAAAGCCAGTGCTCTCATCAGAGTCCTCCATGATTTTTTCGAAAGGAGGTCCTCTGGCTTCAAGGCTTCAGTTATTCCACAAGAACACTTCATTCATGTTCGGTAA 2082 0.4404 MIRNRNGSDRRILTSPAVHPCENIAPSILFPSLITLSNAISTFQHSFFPCNNRNARNAIRFTRLLQPFLHELRDHHSGLPDSVSLSLSELHLTFQKFLFLLEDLSREGAKLYLLMESDRVATQFRVISRSVATALDVFPFGSVEISEETKEHVLLLNEQARRARFEFEQEDKRAVMSVVSGLTRFENRVAPDEGDLKWVLEYIGVKKWSECNKEVKFLEGEIGFDCLKNEKRKMGFLSSLMRFMSYCRCVVMEVVDCEERSKKNDGRRESSVESEMSLSLSFLNSDDFRCPITLELMSDPVTIETGHTYDRSSILKWFSSGNSMCPNTGKRLSSTEMVPNMVLRRLIQQYCYANGISIPFVDLGRRNREITRKVEPGSVAAEGAMIMLAYFLNGKIENGNGEEKNRAAFEIRLLSKTSIFSRSCLVEAGLVPLLLKLLSSSESLTQENAAAALLNLSKCAKSRSVMVEKWGLELIVEVLKKGLKLEARQHVAAVLFYLSPEYGNLIGEEPEAIPSLIRLIKDGSYRSKKNGLVAIFSLLKHPENHRRVLEVEGGTVPLLVEILKGCEKEDIITDSLAILATLAERNEGMLAILEGEALQVAVEIFSCSSSRVGKEHCVALLLSLSLNGGEDVVAYLVKSPSLMGSLYSQLSEGTSRASKKASALIRVLHDFFERRSSGFKASVIPQEHFIHVR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0315 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Aed6g0315 693 Pfam Armadillo/beta-catenin-like repeat 422 457 IPR000225 GO:0005515
Aed6g0315 693 Pfam U-box domain 286 354 IPR003613 GO:0004842|GO:0016567
Aed6g0315 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Aed6g0315 693 PANTHER U BOX DOMAIN-CONTAINING 4 683 - -
Aed6g0315 693 Gene3D - 367 677 IPR011989 -
Aed6g0315 693 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Aed6g0315 693 CDD RING-Ubox_PUB 288 330 IPR045210 -
Aed6g0315 693 SUPERFAMILY ARM repeat 397 668 IPR016024 -
Aed6g0315 693 SUPERFAMILY RING/U-box 286 357 - -
Aed6g0315 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 683 - -
Aed6g0315 693 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Aed6g0315 693 SMART arm_5 459 500 IPR000225 GO:0005515
Aed6g0315 693 SMART arm_5 543 584 IPR000225 GO:0005515
Aed6g0315 693 SMART arm_5 417 458 IPR000225 GO:0005515
Aed6g0315 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 358 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0315 Aed-Chr6 2759204 2761285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0315 1 691 U-box Gene Family AT1G60190 45.312 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0315 - - gmx:100795816 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0315 6 2759204 2761285 Aed6g0315 6 2759204 2761285 ECH