Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0304 ATGCAGATTAATATTCAGGTGGAGGGAGGGCACATGTTCTCTCTTGCAATTGATCCATCCGAAACAATCTTCGATCTCAAAAAGAAGGTGGAAAGCTCACAGAAGATTCCAGTTGAGCGCCAAATCATCATCTTCCATGGCGAATATCTCGAGGACAGTTTCATCGTTTCGGAATGCCATATCAATCACGGAGCGTGCATTGTCCTCCGACTTAGCGCCACTCATGCGCCACCACCGGTGCGTGACTTAAACTTGCCTCCGCCGGGGTTTGACTTAAACTTGACGCCCTCGCAGCAACCGAAACCGCAGCCAACTCTTCCGAGCAGCAGAAAAGAATACGATCCGTCGGCCGGCACTTCGAAATCGTCGCAGTTTAAACTGATGTTGGAGGAAGAGTCAGAGGAGCTGCAAGTGCCAAAGAACTGGAAAGAGCGTATCGTTTACGAAGCGGAGTTGGAGAACAACGTTCTGAAGCTAAAGTCCAAGATTCATACAAGAATTCTTCCAGGCTTCAAGAGGCAAGGTGTGCCAATGGAGAGGATAATGGTGCACAGGCATGCATCGCACGAGGAACTTCTTGACGACCGAGTAATTCGAGAATGTGCGGAACTTATTTCAAAGATTGATCCTGATATCAAAGTGTCCCTCAAGGAACCGCCTGATCTTGCAGTGGCGAGGAAGCTGAAGGTGAAGGTGTTGCCGGTGCAGTGCACAGAGGCGATAGAGATAGAGGTCAATCGTAATGACTTGGTGTCGGTGCTGAGGAAGGAGCTGGAGAAGTTGCAATTGACGCATAGCTTTCGTCTTCCCGCAAATGATGCTTATTACTTCCTTCACAATCTCAAGCGTCTGATTGAAAATGAGTCCTTTCAGAAGCAACATGTCAAGGAAGGTGATATCATCCGAACCCTACAACTCGGGGAAGGTGACGTTATCCAAATTAATTAG 948 0.481 MQINIQVEGGHMFSLAIDPSETIFDLKKKVESSQKIPVERQIIIFHGEYLEDSFIVSECHINHGACIVLRLSATHAPPPVRDLNLPPPGFDLNLTPSQQPKPQPTLPSSRKEYDPSAGTSKSSQFKLMLEEESEELQVPKNWKERIVYEAELENNVLKLKSKIHTRILPGFKRQGVPMERIMVHRHASHEELLDDRVIRECAELISKIDPDIKVSLKEPPDLAVARKLKVKVLPVQCTEAIEIEVNRNDLVSVLRKELEKLQLTHSFRLPANDAYYFLHNLKRLIENESFQKQHVKEGDIIRTLQLGEGDVIQIN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0304 315 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Aed6g0304 315 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Aed6g0304 315 CDD Ubl_ubiquitin_like 3 70 - -
Aed6g0304 315 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Aed6g0304 315 MobiDBLite consensus disorder prediction 80 123 - -
Aed6g0304 315 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 304 - -
Aed6g0304 315 Gene3D - 1 73 - -
Aed6g0304 315 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Aed6g0304 315 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 304 - -
Aed6g0304 315 MobiDBLite consensus disorder prediction 91 123 - -
Aed6g0304 315 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0304 Aed-Chr6 2666713 2667660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0304 1 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.488 2.83e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0304 - - gmx:102667153 145.976