Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0299 ATGAGGCCGATTTTGATGAAAGGCCACGAGAGGCCACTGACGTTCCTCAAGTACAACAGGGACGGCGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCCACCGTGTGGTTCGCCGACAACGGCGAACGCCTCGGCACTTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGAGATTCGGGCCGGCTCATTACGGGGAGTGCGGATCAGACTGCGAAGCTATGGAATGTGCAGACCGTTGTTCACCTTCAATTTCGATTCTCCGGCGCGGTCCGTTGATTTCGCCGTCGGCGATAAGCTTGCGACAGGAAAACTGCTTAATGAGTCAGACAAGGAATCTGGCCATAAAAAGACCGTAACATCACTGGCTAAGTCTGCTGATGGTTCGCATTTCCTTACTGGCTCCCTTGACAAGTCTGCTAGGCTTTGGGATACTAGAACATTGACTCTTATCAAGACGTATGTCACCGAACGACCAGTCAATGCAGTTGCAATGTCGCCTCTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTATGATAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAGGGGCATTTTGGACCAATTAATGCACTGGCTTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACATCAAAATATAG 762 0.4961 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDEIRAGSLRGVRIRLRSYGMCRPLFTFNFDSPARSVDFAVGDKLATGKLLNESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0299 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Aed6g0299 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 103 - -
Aed6g0299 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 104 253 - -
Aed6g0299 253 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 149 - -
Aed6g0299 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 241 IPR001680 GO:0005515
Aed6g0299 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 103 - -
Aed6g0299 253 SMART WD40_4 1 38 IPR001680 GO:0005515
Aed6g0299 253 SMART WD40_4 204 243 IPR001680 GO:0005515
Aed6g0299 253 SMART WD40_4 104 146 IPR001680 GO:0005515
Aed6g0299 253 SMART WD40_4 149 188 IPR001680 GO:0005515
Aed6g0299 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 155 IPR001680 GO:0005515
Aed6g0299 253 Gene3D - 96 253 IPR015943 GO:0005515
Aed6g0299 253 SUPERFAMILY WD40 repeat-like 5 246 IPR036322 GO:0005515
Aed6g0299 253 Gene3D - 2 66 IPR015943 GO:0005515
Aed6g0299 253 Pfam WD domain, G-beta repeat 115 146 IPR001680 GO:0005515
Aed6g0299 253 Pfam WD domain, G-beta repeat 210 241 IPR001680 GO:0005515
Aed6g0299 253 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 241 - -
Aed6g0299 253 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 104 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0299 Aed-Chr6 2636427 2639986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0299 1 253 Eukaryotic Initiation Factors Gene Family AT2G46290 55.488 2.02e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0299 K03246 - twl:120013214 308.916