Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0294 ATGACAGGCTTGGGATCAACAAGAGAAGACGTCACGCGCTTTTCCTCTGCTCCGTTACCATACTTCTACAAGGTGGATGACTCCGGTAAGGTCCAGAGGCTCCGCAAGGAGTGCCCCAATGCGGAGTGCGGCGCCGGGACTTTCATGGCGAATCACTTTGATCGCCACTACTGCGGCAAGTGCGGCCTCACTTATGTCTACCAGAAGGCTGGTGCTTAA 219 0.5525 MTGLGSTREDVTRFSSAPLPYFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGA 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0294 72 PANTHER UBIQUITIN 21 63 - -
Aed6g0294 72 Gene3D - 15 68 IPR038582 -
Aed6g0294 72 Pfam Ribosomal protein S27a 22 64 IPR002906 GO:0003735|GO:0005840|GO:0006412
Aed6g0294 72 SMART Ribosomal_S27_2 19 64 IPR002906 GO:0003735|GO:0005840|GO:0006412
Aed6g0294 72 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 21 63 - -
Aed6g0294 72 SUPERFAMILY Zn-binding ribosomal proteins 22 70 IPR011332 GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0294 22 72 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 88.235 7.55e-31 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0294 K02977 - cpap:110813157 115.546