Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0278 ATGGCTTCTCTAACTCCACTTCTCTCTCTTCTCCTCACTCTTCTTCTTGCAACAACTTCATGTGTAACCGTGTTTTCTTTAGCAGTTTCAATCAAAACAACTTACTTGGAACCTTTCAAATGCTCCCCTAAGATCACCACATGCAATGCCTTACTCTACCACATAAGCTACGGTGACAACATAGACGACATAGCAACCTCTTACTCTGTTAATGCCTCACAAATGAAACCTATAATTCGTGGTGGAAACAAGCAAGATTACCTCATAACAGTGCCTTGCTCTTGCAACGACACCAATGGCCTTGGCGGGTATTTCTATGAGACAACCTACGACAAGGTGAAGACCAATGACACATTTCTGAATATTAGCAACTTTGTCTACAGTGGCCAAGCATGGCCTATTAATAAAAGAAGATTGGACCCAGATAAGGAGTTAAGAATACATCTTCCTTGTGGGTGTTCAGAGAAAAGTGACTCTCAGATTGTTGTCACTTACACGGTTCAGAGAAATGATACAACTGCATCAATTGCTTCTCTGCTAAATGCTACTTTAGATGGCATGGTGAGTATGAATGAAGTTCTGGCTCAGAATCCCTCATTCATAGATGTTACTTGGGTGTTGTATGTTCCCAGGGAATTGAATGGCTTACCACTTTCCAATGGAAAAGACAAGAAACAAAAGTTGGAGATAATCATTGGCATCTTAGCAGGTGTGACATTACTTTCAGTTATTACCTTGATCATTGTCATTGTCTTTCTTAGGAGATCCAGAGCCATTGGAACTGCCCAAAATGATTCAAGTGCTATCTCTAAAAGATCAATTACCAATAGAACTATTTCCACAAAGAACCGAGACTTTCATACAGAATATATTCAAGATGCACAGACATTTGAGTCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACCCGAAAGATTGGAGTAGGTGGATACGGAAGTGTGTTTTTTGGAATGTTAGAAGAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATTCATCATATTAACATTGTGGAGTTGTTGGGATATGCTAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGAGCATCTTCATGATCCATTACTGAAAGGTATGATAAATGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAAAGAACCAATGACGAAGAATTCATAGCGACGAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACTATAAAAACAGATGTGTTTGCATTTGGTGTGGTTCTGGCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACTACCAACAAGCCAACAACATGAGATCACTTGTTACTGTTATGGCAGAAGTAGCTCATTGGTGTTTGTGTGAAGATCCAAATGATAGGCCTGAGATGAGGAAGATTGTTGTGGCATTGTCACAGATTGTGATGTCCTCCACAGAATGGGAAGCATCACTAGGTGGAGACAGAGAGGTCTTCAGTGGGGTACTTGATGGAAGATGA 1626 0.4047 MASLTPLLSLLLTLLLATTSCVTVFSLAVSIKTTYLEPFKCSPKITTCNALLYHISYGDNIDDIATSYSVNASQMKPIIRGGNKQDYLITVPCSCNDTNGLGGYFYETTYDKVKTNDTFLNISNFVYSGQAWPINKRRLDPDKELRIHLPCGCSEKSDSQIVVTYTVQRNDTTASIASLLNATLDGMVSMNEVLAQNPSFIDVTWVLYVPRELNGLPLSNGKDKKQKLEIIIGILAGVTLLSVITLIIVIVFLRRSRAIGTAQNDSSAISKRSITNRTISTKNRDFHTEYIQDAQTFESERPVIYALEEIEDATNNFDETRKIGVGGYGSVFFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGMINVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLAELITGKRALFRDYQQANNMRSLVTVMAEVAHWCLCEDPNDRPEMRKIVVALSQIVMSSTEWEASLGGDREVFSGVLDGR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0278 541 Gene3D LysM domain 155 214 IPR036779 -
Aed6g0278 541 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 486 541 - -
Aed6g0278 541 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 19 407 - -
Aed6g0278 541 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 408 491 - -
Aed6g0278 541 ProSiteProfiles Protein kinase domain profile. 317 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0278 541 Gene3D Phosphorylase Kinase; domain 1 294 388 - -
Aed6g0278 541 Pfam Protein tyrosine and serine/threonine kinase 320 400 IPR001245 GO:0004672|GO:0006468
Aed6g0278 541 Gene3D Transferase(Phosphotransferase) domain 1 390 530 - -
Aed6g0278 541 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Aed6g0278 541 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 486 541 IPR044812 GO:0019199|GO:0045087
Aed6g0278 541 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 19 407 IPR044812 GO:0019199|GO:0045087
Aed6g0278 541 Pfam Protein kinase domain 404 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0278 541 SUPERFAMILY LysM domain 163 210 IPR036779 -
Aed6g0278 541 SUPERFAMILY Protein kinase-like (PK-like) 302 516 IPR011009 -
Aed6g0278 541 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 408 491 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0278 Aed-Chr6 2431340 2435338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0278 297 541 Receptor kinase-like Gene Family AT1G51940 38.671 7.14e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Aed6g0278 Pkinase 6.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0278 - - gmx:100800907 866.685