LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g0261	ATGGAGGAAGCAATGAGGCGTTTCAACGGGGTACCTCCGATTCTCGGACCCGACCCGAAGGGTGACGGGGGAGTCGTCGCCGATAACCCGAAGCGCTCCTCCGCCGTGAACAAGAGACCTTTAGACGGCGGCGGAGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCATGGGGGCGTTACGCGGCGGAGATAAGAGACCCTCAGTCGAAGGAGCGGCGGTGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCCTCAAGGCTCGCACCAACTTCGTTTACCCAACTTCACCGCAACCTTCTTCCGCCCCCACCGAACACTTTTTCCCCAACTTCATTAACAACAACAACAACAACTTTCTCAAACACTCTCAGCAATCACTCTTCAATCACCACCGTAACAACCGCCACTTAACCGGTTCTAACGCCTGCTTTGTTGACCAGCCTCACGGCGTTGACTTTTCAGCCCCGCGAAACCCTTCTTCTTCTGCTTCTTCTCTCAACATGCTTCTCTTTCGTGACCTCATTCACTCCTCTAACCCTTCTTTTCTTTCTTCTGCCACTACTCATAACTTCCATGACCAGTTCTACAACAAAGGTGCTACTTTTTCATCGTTACCTAATGTTTCTTCTTCTTCTTCTACTTCTTCTCTTGCTCCTTGTTATTCGGCGAATAATTATGGTGGAGGATCCTCTTCTGTTAATAAGATGAACACTTTTCCCACTTCTGGAACTAGTTTTGCTGAAAAGGGTTACGATGATGGTGATGGTGGCTCTGGTTTTTTCTCTCGGGAGTCTTCGGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATGCGACACTCTGCCAAAAATGGAGACTTTACGCAACCCTCAGGAGGAGTCACTGCTTCTCCCTTCACTTGTTTCTGAATCAACGCTTGTTTCCACCGCGCAATGCTTCGATGATGACGACATGATGAAGAAGGGGTTTCCGAAGAACAACAACGAAAGTTTAGGTTTTTTTTCTTCTGATCATCACCAAGGCTTTCCCATGCAGCAATTCGACACCTTTAGTGGGGTTAACAGCGTGCAGGCTATGGCTCTTGGGAGTGAACCAATCATGATGAATCATCATGCAGAGAACTGTGCCGTTGAAGATGTTTTTCAGTACCAGGAGCTTCTTAATGCTTTTGCAATCAGAATGCAAAATGCTTAA	1263	0.4964	MEEAMRRFNGVPPILGPDPKGDGGVVADNPKRSSAVNKRPLDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSAPTEHFFPNFINNNNNNFLKHSQQSLFNHHRNNRHLTGSNACFVDQPHGVDFSAPRNPSSSASSLNMLLFRDLIHSSNPSFLSSATTHNFHDQFYNKGATFSSLPNVSSSSSTSSLAPCYSANNYGGGSSSVNKMNTFPTSGTSFAEKGYDDGDGGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCDTLPKMETLRNPQEESLLLPSLVSESTLVSTAQCFDDDDMMKKGFPKNNNESLGFFSSDHHQGFPMQQFDTFSGVNSVQAMALGSEPIMMNHHAENCAVEDVFQYQELLNAFAIRMQNA	420

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed6g0261	420	Pfam	AP2 domain	49	98	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	ProSiteProfiles	AP2/ERF domain profile.	49	106	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	SUPERFAMILY	DNA-binding domain	49	106	IPR016177	GO:0003677
Aed6g0261	420	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	PRINTS	Ethylene responsive element binding protein signature	72	88	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	1	420	-	-
Aed6g0261	420	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE	1	420	-	-
Aed6g0261	420	CDD	AP2	49	105	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	SMART	rav1_2	49	112	IPR001471	GO:0003700\|GO:0006355
Aed6g0261	420	MobiDBLite	consensus disorder prediction	1	50	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g0261	Aed-Chr6	2305546	2306808	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g0261	48	306	AP2-EREBP Transcription Factor Family	AT1G24590	38.610	2.09e-38	139

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Aed6g0261		AP2	3.2e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g0261	-		-	gmx:102669715	536.954

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