Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0261 ATGGAGGAAGCAATGAGGCGTTTCAACGGGGTACCTCCGATTCTCGGACCCGACCCGAAGGGTGACGGGGGAGTCGTCGCCGATAACCCGAAGCGCTCCTCCGCCGTGAACAAGAGACCTTTAGACGGCGGCGGAGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCATGGGGGCGTTACGCGGCGGAGATAAGAGACCCTCAGTCGAAGGAGCGGCGGTGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCCTCAAGGCTCGCACCAACTTCGTTTACCCAACTTCACCGCAACCTTCTTCCGCCCCCACCGAACACTTTTTCCCCAACTTCATTAACAACAACAACAACAACTTTCTCAAACACTCTCAGCAATCACTCTTCAATCACCACCGTAACAACCGCCACTTAACCGGTTCTAACGCCTGCTTTGTTGACCAGCCTCACGGCGTTGACTTTTCAGCCCCGCGAAACCCTTCTTCTTCTGCTTCTTCTCTCAACATGCTTCTCTTTCGTGACCTCATTCACTCCTCTAACCCTTCTTTTCTTTCTTCTGCCACTACTCATAACTTCCATGACCAGTTCTACAACAAAGGTGCTACTTTTTCATCGTTACCTAATGTTTCTTCTTCTTCTTCTACTTCTTCTCTTGCTCCTTGTTATTCGGCGAATAATTATGGTGGAGGATCCTCTTCTGTTAATAAGATGAACACTTTTCCCACTTCTGGAACTAGTTTTGCTGAAAAGGGTTACGATGATGGTGATGGTGGCTCTGGTTTTTTCTCTCGGGAGTCTTCGGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATGCGACACTCTGCCAAAAATGGAGACTTTACGCAACCCTCAGGAGGAGTCACTGCTTCTCCCTTCACTTGTTTCTGAATCAACGCTTGTTTCCACCGCGCAATGCTTCGATGATGACGACATGATGAAGAAGGGGTTTCCGAAGAACAACAACGAAAGTTTAGGTTTTTTTTCTTCTGATCATCACCAAGGCTTTCCCATGCAGCAATTCGACACCTTTAGTGGGGTTAACAGCGTGCAGGCTATGGCTCTTGGGAGTGAACCAATCATGATGAATCATCATGCAGAGAACTGTGCCGTTGAAGATGTTTTTCAGTACCAGGAGCTTCTTAATGCTTTTGCAATCAGAATGCAAAATGCTTAA 1263 0.4964 MEEAMRRFNGVPPILGPDPKGDGGVVADNPKRSSAVNKRPLDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSAPTEHFFPNFINNNNNNFLKHSQQSLFNHHRNNRHLTGSNACFVDQPHGVDFSAPRNPSSSASSLNMLLFRDLIHSSNPSFLSSATTHNFHDQFYNKGATFSSLPNVSSSSSTSSLAPCYSANNYGGGSSSVNKMNTFPTSGTSFAEKGYDDGDGGSGFFSRESSDSGLLEEIVNKFLPKTKPNKCDTLPKMETLRNPQEESLLLPSLVSESTLVSTAQCFDDDDMMKKGFPKNNNESLGFFSSDHHQGFPMQQFDTFSGVNSVQAMALGSEPIMMNHHAENCAVEDVFQYQELLNAFAIRMQNA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0261 420 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Aed6g0261 420 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 420 - -
Aed6g0261 420 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 420 - -
Aed6g0261 420 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Aed6g0261 420 MobiDBLite consensus disorder prediction 1 50 - -
Aed6g0261 420 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0261 Aed-Chr6 2305546 2306808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0261 48 306 AP2-EREBP Transcription Factor Family AT1G24590 38.610 2.09e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g0261 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0261 - - gmx:102669715 536.954