Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0253 GTGAAAAACAAAAAACCAAAAAAGTTACCGAGTGACCGGAGACAGCCGGTGGAAGGTGACGATCTTAAGACAAATCGAGAGAGAGTGAGAACCGCAAAAGTATATGAAGGAATACACCTTTGGACAAAGAAAGCACGAAGACACAGAGAGAGAAACACTGCGAGAATAGCACTGAGTCCCCCACACCACCACACCCAAATTTTCCAATTTACTTACTTAATCAGTGTTGAAAACGAAATGGAATTCGAGGATCAAGAGGAGCAAGAGGAGGAGCTGTGTATGGGTGGTGGTGGCGGAGCGGGTTACGACCCGACCCGGATGAAGGTTCCGCTGGCGGCGGAGCCAGTGAGGAGCAGCAGCAGCAACGGCGGAGGAGGCACCAGGGCGAGGTACAGGGAGTGTTTGAAGAACCACGCCGTCGGAATTGGAGGCCACGCGCTCGACGGTTGCGGCGAGTTCATGGCGGCGGGGACGGAGGGCACTCTGGACGCGCTGAAATGCGCCGCGTGCAGCTGCCACCGTAATTTCCACCGCAAGGAGGCGGATTCCTCCGCCATGGTACTCGGCGGCGGCGACCCGTTTCTGCTGCAGCACCACCACCATCCGCCTCCGCAGTTCGCGGCATACTACCGGCATCCCACCGGGTACCTGCATGTGGGAGGGCAGCATCGCGGCGCGGCGGGGACGCTGGCGCTGCCGTCGACGTCCGGCGGCGGAGGAACGCAGAGCACTCGCGAGGACCAGGAAGACGTTTCGAACCCTAGTGCAGGTGGAGGAACGGGGTCCAAGAAACGTTTCAGGACGAAGTTCACAGTGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAACTAGGTTTGTTACATAGGTGGTGTGGTGACGCCCTTTTTTTAAGGGTGGATGATATCATGATATCATATCTCGAAGGTGGTGAAGAGGAGGGATATTAA 951 0.5605 VKNKKPKKLPSDRRQPVEGDDLKTNRERVRTAKVYEGIHLWTKKARRHRERNTARIALSPPHHHTQIFQFTYLISVENEMEFEDQEEQEEELCMGGGGGAGYDPTRMKVPLAAEPVRSSSSNGGGGTRARYRECLKNHAVGIGGHALDGCGEFMAAGTEGTLDALKCAACSCHRNFHRKEADSSAMVLGGGDPFLLQHHHHPPPQFAAYYRHPTGYLHVGGQHRGAAGTLALPSTSGGGGTQSTREDQEDVSNPSAGGGTGSKKRFRTKFTVEQKDKMLELAEKLGLLHRWCGDALFLRVDDIMISYLEGGEEEGY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0253 316 MobiDBLite consensus disorder prediction 10 25 - -
Aed6g0253 316 Pfam ZF-HD protein dimerisation region 129 181 IPR006456 -
Aed6g0253 316 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g0253 316 MobiDBLite consensus disorder prediction 234 259 - -
Aed6g0253 316 Gene3D - 248 296 - -
Aed6g0253 316 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 130 180 IPR006456 -
Aed6g0253 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 112 286 - -
Aed6g0253 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 112 286 - -
Aed6g0253 316 MobiDBLite consensus disorder prediction 227 268 - -
Aed6g0253 316 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 131 180 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0253 Aed-Chr6 2227441 2228865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0253 80 286 ZF-HD Transcription Factor Family AT4G24660 47.343 2.37e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed6g0253 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0253 - - gmx:100795063 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0253 6 2227441 2228865 Aed7g1563 7 18489635 18490498 PCT