LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g0244	CGCTTCTTCCCTCTGTTATTATTACAGCACAGCCCAGTACGGTACTGTAATGATGGCGATACAAACCAAAAAGCTGTTTCCTTTCAGAGAGGGAGTGGAAATCTGAGAGGTTTTCGCGGCAACGCAATGGCGGAGCAAGGTAACCGCTGGAGCTGGGACGTCGCCGGCTTCAAGCCGTGGAAGTCGCCGCCGTCTCCGTCGCCGGAGCAAAACGATCAGAAATCTACTGCGCCGTTGGTGAGGAGAAATTCCACCTCCTCGGTTCCTCCGCACTCCGTGACTTCCAAAGTTGAAGGATTAAGCGAAAAGGTTAAGCTTGCTAGAAATGACTACCTGCAGTTAAGACAAGAAGCGAGTGAACTTCAAGAATATTCAAATGCAAAACTTGACCGAGTTACACGATATCTTGGTGTTCTTGCTGAGAAAACCCACAAGTTAGATCAAGTTGCCCTTGAAACTGAGGCAAGAATGTCTTCTGTGATCAATGAGAAGAAGAAATTGTTCAATGACTTATTGACATCTAAAGGAAACATAAGGGTATTCTGCCGTGCTAGGCCATTATTTGAAGATGAAGGTCCCTCAGTTGTTGAATTTCCAGATGATTACCTCATCCGTGTAAATACTGGAGATGAATCCTTGTCTAACTCCAAGAAAGAATTTGAATTTGACAGAGTTTATGGACCTCATGTTGGACAGGCTGAGTTGTTCAGTGACGTTCAGCCAATGGTGCAATCAGCTTTGGATGGATATAATATTTCCCTATTTGCATATGGACAAACACGCTCTGGAAAGACACACACTATGGTTGTTCTTTCTGTCTTTCACTGTGAAGGATCAAGCTATGATAGGGGTTTATATGTTCGTTGTTTTGAGGAGCTGTTTGATTTGTCCAACTCGGACACAACTGCTACTTCTCAATATACATTCTGCATTACTGTTTTTGAGCTCTATAACGAACAGATAAGGGATCTGCTTTTGGAGTCTGGGAAAAGCTTGCCTAAACTGTGTTTTGGATCACCTGAATACTTCATAGAACTACTGCAGGAAAAAGTTGATAACCCTCTGGACTTTTCTAGGGTCTTGAAAGCTGCATTCCAGAGTCGAGGAAATAATCCACTAAAGATTAATGTTTCTCATTTGGTTGTTACAATACACATATTTTATAACAATTTGATCACCGGTGAAAACTCATATAGCAAGCTCTCTTTGGTTGATTTGGCTGGAAGTGAATGTTTGATAACAGAAGATGATAGTGGTGAGCGTGTCACGGATATGCTTCATGTTATGAAGTCACTTTCAGCGTTGGGAGATGTTTTGTTTTCTTTGACATCAAAAAAGGATGTTATTCCTTATGAAAACTCGATGCTAACGAAACTATTTGCAGATTCACTTGGTGGGAGTTCAAAAACTCTGATGATTGTAAATGTGTGTCCAAATTCTTCAAATTTATCTGAGACATTACTGTCTCTCAATTTCTCTGCCAGAGCTCGGAATTCTGTATTAAGCCTTGGAAACCGAGATACAATTAAGAAGTGGAGAGATGTTGCAAACGATGCACGCAAAGAGTTATATGAGAAGGAAAAAGAAATCCAATATCTGAAACAAGACGTTCTGAGACTTAAGCAAGCACTTAAAGATGCAAATGATCAATGTGTTCTCCTCTTCAATGAAGTACAGAAGGCATGGAAAGTTTCGTTTGCGTTGCAGACAGATTTAAAGTCAGAGCATATTTTGCTGGCCGATAATTATGAGGTAGAGAAAGAACAAAATGCTCAGCTTAGAAATCAAGTTTCTCATATGTTACAGTTAGAACAAGAGCAAAATTTACAGATACAACAGCGCGATTCAACCATCCAAAGTTTGCAGGCTAAAATTGGAAGCCTTGAAATACAACTCAATGAAGCCCTTAGATCCAGCAACACTGGGTCAAATGTTGGCCCAGAAACTGTGTCTGGAGCTATATCTAATTCCAGGACAACAGGCGATAGCATTGATTCATTGGTAGTAACCAAGAAACTGGAAGAGGAACTCAAGAAACGTGATGCTCTGATTGAGAGGCTGCATGTAGAAAATGAGAAATTATTTGATAAATTGACCGAGAAGGCATCTCTGGCTGAATCACCTCAGCTATCAAGTCCATTATCTAGGGCATCAGTTAATGTTCACCCTCAAAATATGGGAAGGAACGACTCCAGCACCACTGCAAGAGCTCGTTCTATGGATGTTCTTCCTTCATCTTTGATGACAGATAAGAATGATGGCACTGTTGCTTTAGTTAAATCTGGTTCTGAGAAAGTTAAGACTACCCCTGCTGGTGAATATCTTACTGCTGCCCTGAATGACTTTAATCCTGATCAATATGAAGGACTTGCTGCCATTTCTGATGGTGCAAACAAACTTCTGATGCTGGTTCTGGCTGCTGTGATCAAAGCTGGTGCCTCCAGAGAACATGAAATACTTGCTGAAATTAGGGATGCTGTTTTTTCATTTATTCGTAAAATGGAACCAAAGCGAGTAATGGATACCATGCTTGTTTCCCGTGTTAGAATCTTGTATATAAGATCTTTGCTTGCTAGATCCCCAGAGTTGCAATCCATTAAGGTATTGCCAGTTGAATGCTTTCTTGAAAAGGCCAACACTGGACCCAGTAGAAGTTCCAGCCGAGCAAGCAGTCCTGGAAGATCTTCTGTGCAATATTTTGATGAGCAAATCCAGGGATTTAAAGTGAATCTAAAGCCAGAAAAGAAATCCAAATTTTCATCTGTTGTGTTGAAGATACGGGGGATTGATGAGGAAACCTGGAGACAGCAGGTAACTGGGGGAAAGCTTAGGGAAATTAGCGAGGAAGCAAAAACTTTTGCAATTGGAAACAAGGCTCTTGCTGCACTCTTTGTGCATACTCCAGCAGGAGAGCTGCAGCGCCAAATTAGATCCTGGCTTGCAGAGAAGTTTGATTTTCTATCTGTTATGGGCATTGATGCACCGGGGGGGACAACTGGTCAGTTGGAGCTTATTTCAACTGCAATTATGGATGGTTGGATGGCTGGACTTGGCAGTGCTCTGCCTCCCCAAACTGATGCCCTTGGCCAACTTTTATTTGAATATTCAAAACGTGTCTATACTTCTCAACTGCAGCACTTGAAGGATATTGCTGGTACCTTGGCAACAGAAGAGGCTGAAGATGCAGCACAAGTGGCCAAGTTGTGTTCAGCCCTAGAATCTGTTGATCACAAAAGAAGAAAGATTTTACAACAAATGAGAAGTGATGTAGCTTTGCTGACATTGGAAAATGGTGGTTCGCCTATTCAAAATCCTTCTACTGCTGCTGAGGATGCACGATTAGCATCTCTCATTTCACTTGATAGAATATTGAAGCAAGTCAAGGATGTGACTAGACTTTCTACTGTGAACACCATCGAGAAAAGTAAGAAAAGAACAGTGCTCGGTTCTCTTGATAAACTTACAGAACAAATGCCTTCGCTTCTTGAAATTGATCACCCATGTGCTCAGCGGTACATTGCGGATGCCTGCAGAATGGTTGAGTCAATTCCTGAAGAAGATGACCGCTTTCCAAATCTATCACATTCTCGCAAGCCATCAACTGATACAAGCTCTGGATCTGGAACTGAAGTGGCACAGTGGAACGTCCTTCAATTCAATACGGGTAATACCTCACCATTTATAATCAAATGTGGAGCAAACTCAAATTCAGAACTAATCATTAAATCCGAGGCTCGAGTTAAGGAGCCTAAAGGAGGTGAGATTGTGAGAGTTGCCCCAAGGCCGTCCATTTTGGAAAACATGAGCTTGGAGGAAATGAAGCAAGTATTTGCCGAACTACCTGAGGCTCTAAGCTTGCTTGCCCTGGCAAGGACTGCAGACGGAACTCGAGCACGATATTCTAGATTATATAGGACCTTGGCTATGAAGGTTCCATCACTTAAGGATATGGTCAGTGAGCTTGAAAAAGGAGGTGCACTGAAAGATGTGAGAACATAA	3999	0.4194	RFFPLLLLQHSPVRYCNDGDTNQKAVSFQRGSGNLRGFRGNAMAEQGNRWSWDVAGFKPWKSPPSPSPEQNDQKSTAPLVRRNSTSSVPPHSVTSKVEGLSEKVKLARNDYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTHKLDQVALETEARMSSVINEKKKLFNDLLTSKGNIRVFCRARPLFEDEGPSVVEFPDDYLIRVNTGDESLSNSKKEFEFDRVYGPHVGQAELFSDVQPMVQSALDGYNISLFAYGQTRSGKTHTMVVLSVFHCEGSSYDRGLYVRCFEELFDLSNSDTTATSQYTFCITVFELYNEQIRDLLLESGKSLPKLCFGSPEYFIELLQEKVDNPLDFSRVLKAAFQSRGNNPLKINVSHLVVTIHIFYNNLITGENSYSKLSLVDLAGSECLITEDDSGERVTDMLHVMKSLSALGDVLFSLTSKKDVIPYENSMLTKLFADSLGGSSKTLMIVNVCPNSSNLSETLLSLNFSARARNSVLSLGNRDTIKKWRDVANDARKELYEKEKEIQYLKQDVLRLKQALKDANDQCVLLFNEVQKAWKVSFALQTDLKSEHILLADNYEVEKEQNAQLRNQVSHMLQLEQEQNLQIQQRDSTIQSLQAKIGSLEIQLNEALRSSNTGSNVGPETVSGAISNSRTTGDSIDSLVVTKKLEEELKKRDALIERLHVENEKLFDKLTEKASLAESPQLSSPLSRASVNVHPQNMGRNDSSTTARARSMDVLPSSLMTDKNDGTVALVKSGSEKVKTTPAGEYLTAALNDFNPDQYEGLAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKANTGPSRSSSRASSPGRSSVQYFDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDEETWRQQVTGGKLREISEEAKTFAIGNKALAALFVHTPAGELQRQIRSWLAEKFDFLSVMGIDAPGGTTGQLELISTAIMDGWMAGLGSALPPQTDALGQLLFEYSKRVYTSQLQHLKDIAGTLATEEAEDAAQVAKLCSALESVDHKRRKILQQMRSDVALLTLENGGSPIQNPSTAAEDARLASLISLDRILKQVKDVTRLSTVNTIEKSKKRTVLGSLDKLTEQMPSLLEIDHPCAQRYIADACRMVESIPEEDDRFPNLSHSRKPSTDTSSGSGTEVAQWNVLQFNTGNTSPFIIKCGANSNSELIIKSEARVKEPKGGEIVRVAPRPSILENMSLEEMKQVFAELPEALSLLALARTADGTRARYSRLYRTLAMKVPSLKDMVSELEKGGALKDVRT	1332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g0244	1332	Coils	Coil	97	124	-	-
	Aed6g0244	1332	Coils	Coil	673	693	-	-
	Aed6g0244	1332	Gene3D	Kinesin motor domain	122	499	IPR036961	-
	Aed6g0244	1332	PANTHER	KINESIN-LIKE PROTEIN KIN-14A-RELATED	44	1308	IPR030109	GO:0008017\|GO:0009904
	Aed6g0244	1332	ProSiteProfiles	Kinesin motor domain profile.	177	499	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed6g0244	1332	PRINTS	Kinesin heavy chain signature	249	270	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed6g0244	1332	PRINTS	Kinesin heavy chain signature	400	418	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed6g0244	1332	PRINTS	Kinesin heavy chain signature	449	470	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed6g0244	1332	Coils	Coil	618	638	-	-
	Aed6g0244	1332	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	542	IPR027417	-
	Aed6g0244	1332	MobiDBLite	consensus disorder prediction	55	96	-	-
	Aed6g0244	1332	MobiDBLite	consensus disorder prediction	1186	1208	-	-
	Aed6g0244	1332	Pfam	Kinesin motor domain	205	498	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed6g0244	1332	ProSitePatterns	Kinesin motor domain signature.	399	410	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Aed6g0244	1332	MobiDBLite	consensus disorder prediction	705	735	-	-
	Aed6g0244	1332	Coils	Coil	509	550	-	-
	Aed6g0244	1332	PANTHER	KINESIN-LIKE PROTEIN KLP-3	44	1308	-	-
	Aed6g0244	1332	MobiDBLite	consensus disorder prediction	67	94	-	-
	Aed6g0244	1332	SMART	kinesin_4	175	507	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g0244	Aed-Chr6	2125638	2144179	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g0244	164	500	Calmodulin-binding Proteins	AT5G65930	34.758	2.58e-46	180

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g0244	-		-	gmx:100790504	2271.89

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g0244	6	2125638	2144179	Aed7g1554	7	18282703	18310931	PCT