Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0232 ATGGATGCAATCCAAACAGAGAAAATCTATGTTGGCGTTGGTAATGATGCGCAGGATGGATTTAAGACTCTGAATTGGGCTCTCAAGAAGTGGAATTCTCATCGAGTTTCAATTGTTATTCTCCATGTGACACACAATAGTACCATGGATTATGTCCACACACCATTTGGCAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACTAATTCTCAGGAAAGATGAGCAGGACAAAATCAACAAACTCCTTTCCAAGTATATTGCTTTCTGTGGCAAGATACCAGCAGAGATTCTTGAAGTTGAGAAATTTGATGAACCTTTGCAAAAGCGTGTCATAGACTTGATCTTTGGTCTTGGAATAACCAAGTTGGTCATGGGATTTTCATTCATGAAGCCCTCCATGAAATCCAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGTGAATTGTTCATTATTTGTGGAGGGAAGCAAGTTTTCCTGAGAGGAAAGAACGATGAGAAAATCATGGAGGATGATCATGGGGTCATGGTTGCAAGAATGAGAGATAAGATAACTTTCAAAGATTGGTTAGACAAATGGTTCAATAACGATTCACAACAAGAAAAAAGTACATCATTTTCCTCAACCAATTTGGAGTCCCCTGTGAACCGAAACCAGTGGGAATTTTACCTCCAAGAAATTGAAAATTACTATCAAGAGTTGTTGTTGTCTTCGAATTCTGAAGAAGGAAGCTGCGTGCTAGAAAATGACGACTCACAGATTGGACCAATTGAGCCACATGTCACAGAACACAACAATTATAATATGAGTGCTGTAGAAAAAATTGAGATTCTGAAAAATAAGCTGGTTGAAGCTCAGAAGACCATTGAACTGAAGAGGAAAGAAGCAAAGGATAATAGAGAGAGGCACACAAAAGCTGAATGGGCAATTTGTTTATGCAACAGTCGGGCCGAAGAAGTGGAAAGTCGAATACGTGAGGAGGTCAGTGCAAGAGAAGAGCTAAAGAAGGAATCAGACGCAGAGAAGGAACAAACAGAGGAGATGAGAACGGAGGTGGAAGAGAGGAAGAGGAGGCTCACCTCCCTCATGGAACTCCAATCCGAGCTCTCAAACAGGCTCCAATTATGGGCGGCGGCCAAGACGCGATCGGAGACGCAGCTGGACAAGGCGGTGGGAGAGAGGAGAGAGATGGTGAGGGAGATAGAGGAGCTGCGGCGCCAGAGGGACGTCCTCAACCGAAGGATCGAGTTCTGCAACCAGAAGAACGCCATCGGAATGGCCGCCAGGCTCGCCGCCGAGACAACGTGCTGCACCTTCCGGGAGTACACAGAGGAGGAGCTCCGCCTGGCAACCGATAACTTCTCCGAGCGCCTCAGGTTGAAGTCTGCCGGGGATTGGACAGATGTCTACAGAGGACGTTTTAATCACTCCACTGTTGCAATCAAGATGCTACCTTCTTTCTCACACCAACATTTCGAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCAACCTCATGTAGTTGCCATGATGGGCTTTTGCATGGAGCCCAAGTGCATAGTTTTGGAATACATGCGCAATGGAAGCTTACGGGACATGCTGTTTTCCAGGAGAAGAAACCGGGCTTTACGCTGGCACGACCGAATACGAATAGCCACAGAAGTTTGTTCAGGCCTGGGCTTTCTCAATGCAGCTGAGCCGAGGCCCGCTATTCATTGTCATTTGACCCCATCCAAAATCCTCCTAGACCGCAATCTGGTTGCAAAGATCACGGGCTTCGGGCTTCACGAATGCCATGATGAGAAGTGTAACGTTGAGTCAGATTTGCGGGCCATAGGGGTTTTGTTGATGCACCTTTTAACAGGAAGAAATTGGGCTGGGCTCGTTGAGGAAGTGATGGATATGGATAGAAAAGCTTTGGGTAGCGTTCTTGATGAGATGGCTGGACAGTGGCCATTGGATCTAGCAAAGGAACTTGCGGGCCTGGCTATGAGGTGCATGTCCATCAAAAGCGAGACCAACTCAGAACTGAGCATTGCAAGGGTTTTAGAGGAACTCAATGAGATAAGAAGAAAGGGAGATGAAATAGTTAGAAAGGAAGGGCGAAACGTAATAATCAATGGTGGATGTATAGATAGAGAGGGATCCAATGATGATGTGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGATGTAATGAAAAACCCACACGTGGCAGCAGATGGATTCTCCTACGAGCTAGAAGCAATGGAACAGTGGCTGCACTCGGGGCGTGACACGTCACCAATGACAAATTTGAGGCTCAAGCACACATTCCTCACTCCGAATCACACTCTTCGTTCCTTAATTGAGGATTGGCAGACCAACAAATCACCTAGAGTTACACATTAA 2415 0.4584 MDAIQTEKIYVGVGNDAQDGFKTLNWALKKWNSHRVSIVILHVTHNSTMDYVHTPFGKLPARSVSEEKLLILRKDEQDKINKLLSKYIAFCGKIPAEILEVEKFDEPLQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQVFLRGKNDEKIMEDDHGVMVARMRDKITFKDWLDKWFNNDSQQEKSTSFSSTNLESPVNRNQWEFYLQEIENYYQELLLSSNSEEGSCVLENDDSQIGPIEPHVTEHNNYNMSAVEKIEILKNKLVEAQKTIELKRKEAKDNRERHTKAEWAICLCNSRAEEVESRIREEVSAREELKKESDAEKEQTEEMRTEVEERKRRLTSLMELQSELSNRLQLWAAAKTRSETQLDKAVGERREMVREIEELRRQRDVLNRRIEFCNQKNAIGMAARLAAETTCCTFREYTEEELRLATDNFSERLRLKSAGDWTDVYRGRFNHSTVAIKMLPSFSHQHFESKVRLLGDIRQPHVVAMMGFCMEPKCIVLEYMRNGSLRDMLFSRRRNRALRWHDRIRIATEVCSGLGFLNAAEPRPAIHCHLTPSKILLDRNLVAKITGFGLHECHDEKCNVESDLRAIGVLLMHLLTGRNWAGLVEEVMDMDRKALGSVLDEMAGQWPLDLAKELAGLAMRCMSIKSETNSELSIARVLEELNEIRRKGDEIVRKEGRNVIINGGCIDREGSNDDVPSVFLCPILQDVMKNPHVAADGFSYELEAMEQWLHSGRDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKSPRVTH 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0232 804 Pfam U-box domain 728 798 IPR003613 GO:0004842|GO:0016567
Aed6g0232 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 803 IPR013083 -
Aed6g0232 804 ProSiteProfiles Protein kinase domain profile. 463 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0232 804 Coils Coil 276 310 - -
Aed6g0232 804 PANTHER OS02G0152300 PROTEIN 5 797 - -
Aed6g0232 804 SUPERFAMILY Protein kinase-like (PK-like) 446 677 IPR011009 -
Aed6g0232 804 Coils Coil 325 370 - -
Aed6g0232 804 SUPERFAMILY RING/U-box 722 797 - -
Aed6g0232 804 Coils Coil 395 429 - -
Aed6g0232 804 ProSiteProfiles U-box domain profile. 727 801 IPR003613 GO:0004842|GO:0016567
Aed6g0232 804 MobiDBLite consensus disorder prediction 338 361 - -
Aed6g0232 804 Gene3D Transferase(Phosphotransferase) domain 1 534 702 - -
Aed6g0232 804 Gene3D Phosphorylase Kinase; domain 1 433 533 - -
Aed6g0232 804 CDD RING-Ubox_WDSUB1_like 732 773 - -
Aed6g0232 804 Pfam Protein tyrosine and serine/threonine kinase 471 610 IPR001245 GO:0004672|GO:0006468
Aed6g0232 804 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 797 - -
Aed6g0232 804 SMART Ubox_2 731 794 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0232 Aed-Chr6 2023609 2028858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0232 7 803 U-box Gene Family AT5G65500 49.815 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed6g0232 PK_Tyr_Ser-Thr 4.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0232 - - gmx:100786771 1386.32