Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0231 ATGGCTCGTGCTACTAACTGGCTATCGTTCTCTCTCTCGCCCATGGAAATGCTCCGAACCTCCGAACCGCAGTTCGTGCAATACGACGCCGCTTCTGCCACTTCCTCGCATCACTACTTCCTCGATAACTTGTACAACAACGGGTGGGGGAACGGGAACCACAAGTTCGAGCAGAATCTGAACCACAGCGATGTGAGTTTCATCGACTCCTCGTCGCAGTCGCAGAGCGTGGGACACGCGCCGCCGCCGCCGAAGCTGGAGGACTTTCTCGGTGACTCCTCCGCCGTGATGCGCTACTCCGACAGCCAGACGGAGACACAGGACTCGTCGCTGACGCACATGTACGACCACCATGGCTCTGCGTACTTCGCCGGTGACCAGCAGGATCTCAAGGCCATTGCTGGATTCCAAGCTTTTTCGACCAACTCCGGCTCCGAGGTTGATGATTCTGCATCCATCGGAAAAGCGCAGGCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCTGGCAACGAGTTCGCTGCGTACTCCGGTGGCACCGCCACCAGAACTCTGTCGCTCGCCGTCGCGCAGAGCTCCGAGAAGGCCGTCGTCGCGGCGGAGTCCGATAGCTCGAAGAAGGTCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTCACCAGGCACCGGTGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGTTGCAGAAGGGAGGGTCAAGCCAGAAAAGGGCGTCAAGGTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACCGCTACCACCAACTTCCCTGTTTCCAGTTATACAAAGGAATTGGAGGAGATGAAACATGCAACAAAGCAAGAATTTATTGCATCATTGCGAAGGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACCGAGGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAACGCAGTAACCAACTTTGAGATGAATAGATATGATGTGGAAGCCATAATGAAGAGTTCTCTTCCAGTGGGTGGGGCAGCAAAGCGCTTGAAGCTTTCCCTAGAATCAGAGCATAAAGCTCTACCTGTGAGCAGCAGCAGTCAGCAGCAGAATCCACAGTGTGGAAACATCAATTTCTCGGGCATTCATCAGCCAATTGCTTCTATCCCTTGTGGAATTCCGTTTGATTCCACAACAGCATATTATCATCCCAACCTTTTTCAACATTTTCACCCTACCAACGCTGCCACAGCAGTTACTTCCGCCAATGCAAATGCACTAACTGCACTGCCACCAACTGCAGCAGCAGCTGAGTTCTTTATTTGGCCTCATCATCAGTCTTATTGA 1491 0.5218 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATSSHHYFLDNLYNNGWGNGNHKFEQNLNHSDVSFIDSSSQSQSVGHAPPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFAGDQQDLKAIAGFQAFSTNSGSEVDDSASIGKAQASEFGTHSIESSGNEFAAYSGGTATRTLSLAVAQSSEKAVVAAESDSSKKVVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSSYTKELEEMKHATKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKLSLESEHKALPVSSSSQQQNPQCGNINFSGIHQPIASIPCGIPFDSTTAYYHPNLFQHFHPTNAATAVTSANANALTALPPTAAAAEFFIWPHHQSY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0231 496 SUPERFAMILY DNA-binding domain 316 376 IPR016177 GO:0003677
Aed6g0231 496 SMART rav1_2 218 287 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 SMART rav1_2 317 381 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 Pfam AP2 domain 218 273 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 Pfam AP2 domain 317 367 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 ProSiteProfiles AP2/ERF domain profile. 218 281 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 SUPERFAMILY DNA-binding domain 217 283 IPR016177 GO:0003677
Aed6g0231 496 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 PRINTS Ethylene responsive element binding protein signature 357 377 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 ProSiteProfiles AP2/ERF domain profile. 317 375 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 491 - -
Aed6g0231 496 CDD AP2 316 375 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 CDD AP2 217 283 IPR001471 GO:0003700|GO:0006355
Aed6g0231 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 491 - -
Aed6g0231 496 Gene3D AP2/ERF domain 218 283 IPR036955 GO:0003700|GO:0006355
Aed6g0231 496 Gene3D AP2/ERF domain 317 377 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0231 Aed-Chr6 2007719 2013160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0231 84 496 AP2-EREBP Transcription Factor Family AT5G10510 59.036 5.40e-167 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aed6g0231 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0231 K09285 - gmx:100777168 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0231 6 2007719 2013160 Aed7g1547 7 18169121 18176792 PCT