Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0220 ATGAAAGGCTCAAGTGTCCCCATAAACATAGACAAAAGGTATATATTGCGAAGAGGTGATTATGGATTTTATTCATACGCAATATTTAATCGACCAGCAGGATTACCTGCAGTGAATGTTTATCAAATTAGGATTGTTTTCAAACTTGACGAAGATAGGTTCCACTACATGGCCATATCCGACACTAGGCAAAGGAAGATGCCAACTGGATTTGATAGAAGAACGGGTAAAATCTTGGCGTATCCAGAAGCTATTCTCATAACTAATTCATCTGACCCAAAACTTATAGGAGAGGTGGATGACAAATACCAATACTCGATTGAGAACAAAGATAACACTGTTCATGGGTGGATTACTCAGGATGATTCAGAACCCGTGGGTTTCTGGTTGATAACACCCAGTGACGAGTTTCGCCATGCTGGGCCCATCAAGCAAGACCTCACCTCTCATGTTGGCCCAACTACTCTTTCGATGTTTGTGAGCACTCATTATGCTGGCAAGGAGGTAGCCATAACATTTGGTGAAGGGGAGACATATAATAAGGTTTTTGGCCCAGTTTTTGTATACCTTAACTCTGTTCCAAACAAAGCTCAATTTAAGTCTCTGTGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTCAAAAAATGGCCTTATGATTTTGTTGGATCAAAGGATTTCCTTCCACCCAATCAACGGGGAACAGTGGCAGGACGACTAGTAGTCCAAGATGGGGGAATGAAGGCTCAACCTGCTAACAATGCTTATGTTGGTCTAGCTTTGCCTGGAAATGCAGGATCATGGCAGATAGAAAGCAAGGGTTATCAATTCTGGATTCAAGCAGACAAAGATGGACACTTCTCAATTGGAAATATTGTGCCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTATAGATACAAAACTATAATTACCATCATACCAGGGTGCAGCATCAACTTGAATTCACTTGTATATTATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCGGAATTCTATATACCAGACCCTAACCCCATGTTCAGGAACAGATTATTCACAAACGATAGCCAAGACAAGTTTAGGCAATACGGCTTGTGGGCACGTTACACTGAATTATATCCAAACCATGATCTCGTTTACACTGTTGGTGTATCTGACTATCACAAGGATTGGTTTTATGCTCAACTTACCAGTCATGACTATGGTAGTAATCATTTGGTGAAAGGAAAGAACACCATCTATTTGACACAGTCAAAAGGCATAAGTCCTTTCATGGGACTTATGTATGATTATGTCCGCTTAGAAAGTCCTCCAATTAAAAACACTTCATTGTGA 1380 0.4087 MKGSSVPINIDKRYILRRGDYGFYSYAIFNRPAGLPAVNVYQIRIVFKLDEDRFHYMAISDTRQRKMPTGFDRRTGKILAYPEAILITNSSDPKLIGEVDDKYQYSIENKDNTVHGWITQDDSEPVGFWLITPSDEFRHAGPIKQDLTSHVGPTTLSMFVSTHYAGKEVAITFGEGETYNKVFGPVFVYLNSVPNKAQFKSLWSDAVEQLSNEVKKWPYDFVGSKDFLPPNQRGTVAGRLVVQDGGMKAQPANNAYVGLALPGNAGSWQIESKGYQFWIQADKDGHFSIGNIVPGDYNLYAWVPGFIGDYRYKTIITIIPGCSINLNSLVYYPPRNGPTLWEIGIPDRSAAEFYIPDPNPMFRNRLFTNDSQDKFRQYGLWARYTELYPNHDLVYTVGVSDYHKDWFYAQLTSHDYGSNHLVKGKNTIYLTQSKGISPFMGLMYDYVRLESPPIKNTSL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0220 459 CDD RGL4_M 232 329 IPR029413 -
Aed6g0220 459 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 413 - -
Aed6g0220 459 Gene3D - 228 328 - -
Aed6g0220 459 Pfam Polysaccharide lyase family 4, domain II 253 326 IPR029413 -
Aed6g0220 459 CDD RGL4_N 7 198 - -
Aed6g0220 459 SUPERFAMILY Galactose-binding domain-like 336 450 IPR008979 -
Aed6g0220 459 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 417 453 - -
Aed6g0220 459 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 413 - -
Aed6g0220 459 Pfam Polysaccharide lyase family 4, domain III 339 413 IPR029411 -
Aed6g0220 459 SUPERFAMILY Starch-binding domain-like 228 327 IPR013784 GO:0030246
Aed6g0220 459 Pfam Rhamnogalacturonate lyase family 2 99 IPR010325 -
Aed6g0220 459 Gene3D - 2 199 IPR014718 GO:0030246
Aed6g0220 459 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 417 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0220 Aed-Chr6 1894076 1896796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0220 424 452 Polysaccharide Lyase AT1G09880 72.414 2.25e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0220 K18195 - gmx:100781089 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0220 6 1894076 1896796 Aed7g1531 7 17747370 17753607 PCT