Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0219 ATGGGTTATAAGTCTCAACAGGTGATAATTGACAACGGCATCGTTTCTCTGAATTTGTACTTCGACGTTGTTTGGAACGACCCAGAAAAACCTGGCCTTTTTGACAGAGTTAAGGGAACAATTTTCTCAGTGATTGTAGCAAAGGACGATATAGTGGAGGTTTCATTTTTAAGAACATGGACAGCTTCCATGACAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTGCAAAGAGGCGATTCTGGGTTTTATTCGTATGTAATATTTGACAGACCACCAGGATTACCTGCAGTGGAGGTTTATCAAATTAGAAATGTTTACAAACTCGACGAAAACAGGTTCCACTACATGGCCATATCCGACACTAGGCAAAGGAAGATGCCAACTAAGAGAGATAGAGGCACGGGTAAAATCCTGGCGTATCCAGAAGCTGTTCTCATAACTAATTCATCTGACCCAGAATTTATAGGAGAGGTGGATGACAAATACGAATACTCGAGTGAGAACAAAGATAGCTATGTTCATGGGTGGATTACCCAGGATGATTTAGCACCACAGGGTTTTTGGCTGATAACTCCCAGTAATGAGTTCCGCAGTGCTGGGCCTATTCGGCAAGAGCTCACCTCTCATGTTGGTCCAACTACTCTCTCAATGTTCAAGAGCACTCACTATGGTGGCAAAGGGTTAAACATGACATTTGGTGAAGGAGAGACTTACAAAAAGGTTTTTGGCCCAATTTTTATCTACCTTAACTCTGTTCCAAACAAAGCTAAGTTTCAGTCTCTGTGGTCAAATGCTGTAGCACAGTTATCAAATGAAGTCAAAAAATGGCCTTATGATTTTGTTGGATCAAAAGATTTTCTTCCAACCAGTCAACGAGGAACAGTGTCAGGACTACTAAAAGTCCAAGATGGGTATATACGCCAATGCCTTATTTTATTAGCTACATTTTTATTCTTTGATTACGTATATAGTAATTGCTTTACCTTGTTCATCAGAGAAGGGAAAGCTCAACCTGCTATCAATGCTTACGTTGGACTAGCTTTGCCTGGACCTGTAGGATCATGGCAAAATGAATGCAAGGGTTATCAATTTTGGACTCAAGCTGGCAAAGATGGACAATTTTCAATTAGAAATATTGTACCTGGGGAATACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTATAGATATCAAACTAAAATTACCATCATGCCAGAAATGGTGCTACTCTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTTTGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAATTATATCCAAAACATGATCTCATTTACAACGTTGGTGTATCTGACTATCACAAGGATTGGTTTTTCGCTCAGGTTACTAGGAGCACAGTGAGTGGGGGATACGTTCCAACCACATGGCAGATTCAATTCAACCTTCAAAATATCATAAAGAGAGGAAACTACACACTACAAGTGGCCCTGGCATCCGCAACTTATTCTAGATTGGAGGTTAGATTCAATGATCCTAATGTTGAGATTCCTCACTTCTCCACTGGGACATTAACAATAGGCGATGACAATGCCATAGCAAGGCATGGCATCCACGGATTGTATACGCTATACAGTATAGTTGTAGGTAATAATCATTTGCTAAAAGGAATGAACACCATCTATTTGACACAAGCAGAAGTCGGAGGTTCTTTCGTAGGAGTTATGTATGATTATATCCGCTTAGAATATCCTCCAACTTAA 1779 0.403 MGYKSQQVIIDNGIVSLNLYFDVVWNDPEKPGLFDRVKGTIFSVIVAKDDIVEVSFLRTWTASMTGSSVPINIDQRYILQRGDSGFYSYVIFDRPPGLPAVEVYQIRNVYKLDENRFHYMAISDTRQRKMPTKRDRGTGKILAYPEAVLITNSSDPEFIGEVDDKYEYSSENKDSYVHGWITQDDLAPQGFWLITPSNEFRSAGPIRQELTSHVGPTTLSMFKSTHYGGKGLNMTFGEGETYKKVFGPIFIYLNSVPNKAKFQSLWSNAVAQLSNEVKKWPYDFVGSKDFLPTSQRGTVSGLLKVQDGYIRQCLILLATFLFFDYVYSNCFTLFIREGKAQPAINAYVGLALPGPVGSWQNECKGYQFWTQAGKDGQFSIRNIVPGEYNLYAWVPGFIGDYRYQTKITIMPEMVLLFGKLESQIAQLQNSLFRQYGLWERYTELYPKHDLIYNVGVSDYHKDWFFAQVTRSTVSGGYVPTTWQIQFNLQNIIKRGNYTLQVALASATYSRLEVRFNDPNVEIPHFSTGTLTIGDDNAIARHGIHGLYTLYSIVVGNNHLLKGMNTIYLTQAEVGGSFVGVMYDYIRLEYPPT 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0219 592 Pfam Polysaccharide lyase family 4, domain III 435 587 IPR029411 -
Aed6g0219 592 SUPERFAMILY Galactose-binding domain-like 432 589 IPR008979 -
Aed6g0219 592 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 19 416 - -
Aed6g0219 592 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 420 591 - -
Aed6g0219 592 CDD RGL4_N 5 261 - -
Aed6g0219 592 Gene3D - 337 412 - -
Aed6g0219 592 Pfam Polysaccharide lyase family 4, domain II 345 410 IPR029413 -
Aed6g0219 592 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 19 416 - -
Aed6g0219 592 Gene3D - 32 261 IPR014718 GO:0030246
Aed6g0219 592 Pfam Rhamnogalacturonate lyase family 19 162 IPR010325 -
Aed6g0219 592 Gene3D - 432 588 - -
Aed6g0219 592 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 420 591 - -
Aed6g0219 592 SUPERFAMILY Starch-binding domain-like 353 409 IPR013784 GO:0030246
Aed6g0219 592 CDD RGL4_M 295 409 IPR029413 -
Aed6g0219 592 SUPERFAMILY Galactose mutarotase-like 72 255 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed6g0219 592 CDD RGL4_C 440 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0219 Aed-Chr6 1882648 1886259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0219 20 590 Polysaccharide Lyase AT1G09880 49.103 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0219 K18195 - gmx:100781089 818.535