LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g0207	ATGACGACTCCTCAAGCAAAAAGGTACCACCATCGTGTTGATCGTCAAACAGTGATTGACATAAAGAAACCACCGGTGAGCTTCACCGGGGGACTTGTGTTTGAGTGCCTCACATACACCGTTACAAAGAAGAAGAAGGTTGAGGGGGAGTGGTCGAATGAAGAGGTGGACTTGCTGCATGACATCACTAGCTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGGCCTAGTGGCGCGGGAAAGTCCACTCTTTTGGATGGCCTTGCTGGGAAGATTGCGAGTGGGAGCCTCAAAGGGAGGGTTTCCTTGGACGGTGCAAGTGTGAGTGCGAGCTTGATCAAGAGAACCTCTGCATATATCATGCAGGAAGATAGGCTCTTCCCAACGCTCACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTTCGTCTGAGCTCACTCTCACTTGCTGATAAGAAGCAGAGGGTGGAGAAGCTCATTGACCAGCTTGGCTTAACGTCATCTCGAAACACCTACATAGGAGACGAAGGTACGAGAGGAGTGTCCGGCGGAGAGCGGCGGCGGGTCTCAATCGGCGTGGACATAATCCACGGCCCATCCCTCCTGTTCCTTGACGAGCCAACCTCAGGGCTAGACTCGAGCAGCGCCCACAGCGTGATAGAGAAGGTGCACGACATCGCACGCAGCGGCAGCACCGTGATCCTCACCATCCACCAGCCCTCCTCGAGAATCCAACTCCTCCTCGACCACCTCATCATCCTCGCACGCGGCCAGCTCATGTTCCAAGGCTCCCCCCATGACGTGGCACTCCACCTGAGCCGCATGCCGCGCAAGATCCCCAAGGGAGAGAACCCCATCGAGCGTCTCATTGACGTTATCCAAGAGTACGACCAGTCCGAGGTTGGTGTCGAGGCACTCGCTGAGTTCGCACGCACTGGCGTCAAGCCACCTCCTTTGTCCGACCAACAACACTCGCTGTCTTCTGTTGCGCCCTCCCCGCACCACCTTGGCCATAGGTACGAGGATAAATCTCAGGACCTTTCTTACTCCTCGCAGGTGAGTAGATCAAGGGTCGTGGATGACTTTGATCACAGTCTCAGAAGTCCGTATAACAACAACACATCAATGTCGTGGAGCACTGGCAATAGTGCAGCCTTTTTGAGATTCACTCCTTCACGACTCAAGAATGATCACAAGCTGAAGAATACCACAAGAAACTCATTTGATTTGATACGCAGAACTAATGTTTCACCAGCTGGGTACTACACATACTCGAGTGAAATCCTACAAGCCACACCAACACCGCATAGCAGTGACTACACAGTGAATGAGAACGACTACCTCACACCCTCAAACGCGAGACAGGAACACCTTGGGCCAAAGTTCGCAAACTCATACCTAGGAGAGATATGGATCCTGATGCGGCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTTTTCCTTTCAAGACTGATGGTGCTAACCTTCATGGGCATGATGATGGCCACCATGTTCCACAACCCCAAAGACAATCTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACTGTGTGCCTCTTCTTCTTCTCTTCCAACGACGCCGTCCCGGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACTTCTCACAACGCCTATAGAGCTTCAACTTACACCATCGCAGGGTTAATCACTCACATGCCATTTATTCTCCTCCAAGCAACTGCTTATGCTGCCATTGTTTGGTTTGGTCTGAAGCTTCGAGGCCCTTTTCTTTACTTCTTGCTCGTTCTCTTTGTTTCTCTTCTGTCCACCAATTCGTTTGTTGTGTTTGTGAGCTCGGTGGTTCCAAACTACATCCTTGGTTATGCTGTGGTTATTGCCTTCACTGCTTTGTTCTTCTTGTTCTGTGGATACTTCTTGAACAGCCATGACATCCCCCATTGGTGGCGTTGGATGAACAAAATTTCGACCATGACGTACCCTTATGAGGGGCTCTTGATGAACCAGTACCAGACCAATGATACCTTTGGGTTTAGGTACATTGATGGTGCACCCATATCCGGTTTTGATATCCTGAAGGGTCTGCATATTGACACTGATGAACATAAGAAGAGGAAAGTTGTGCTTATAATGTTTGGTTGGGCTGTGCTATATAGGATCTTGTTTTACTTGGTCCTTCGCTTTGCATCAAAAAACCAGAGGTCGTAG	2226	0.5009	MTTPQAKRYHHRVDRQTVIDIKKPPVSFTGGLVFECLTYTVTKKKKVEGEWSNEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGKIASGSLKGRVSLDGASVSASLIKRTSAYIMQEDRLFPTLTVYETLMFAADFRLSSLSLADKKQRVEKLIDQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSSSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPHDVALHLSRMPRKIPKGENPIERLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSDQQHSLSSVAPSPHHLGHRYEDKSQDLSYSSQVSRSRVVDDFDHSLRSPYNNNTSMSWSTGNSAAFLRFTPSRLKNDHKLKNTTRNSFDLIRRTNVSPAGYYTYSSEILQATPTPHSSDYTVNENDYLTPSNARQEHLGPKFANSYLGEIWILMRRNFINIRRTPELFLSRLMVLTFMGMMMATMFHNPKDNLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGLITHMPFILLQATAYAAIVWFGLKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAVVIAFTALFFLFCGYFLNSHDIPHWWRWMNKISTMTYPYEGLLMNQYQTNDTFGFRYIDGAPISGFDILKGLHIDTDEHKKRKVVLIMFGWAVLYRILFYLVLRFASKNQRS	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g0207	741	Pfam	ABC-2 type transporter	470	676	IPR013525	GO:0016020\|GO:0140359
	Aed6g0207	741	Coils	Coil	740	741	-	-
	Aed6g0207	741	SMART	AAA_5	68	266	IPR003593	-
	Aed6g0207	741	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	55	270	IPR027417	-
	Aed6g0207	741	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	32	282	IPR003439	GO:0005524
	Aed6g0207	741	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 19	13	735	-	-
	Aed6g0207	741	MobiDBLite	consensus disorder prediction	315	351	-	-
	Aed6g0207	741	CDD	ABCG_EPDR	32	264	-	-
	Aed6g0207	741	ProSitePatterns	ABC transporters family signature.	182	196	IPR017871	GO:0005524
	Aed6g0207	741	Gene3D	-	44	276	IPR027417	-
	Aed6g0207	741	Pfam	ABC transporter	59	210	IPR003439	GO:0005524
	Aed6g0207	741	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	13	735	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g0207	Aed-Chr6	1799704	1802828	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g0207	52	296	Calmodulin-binding Proteins	AT2G36910	26.210	2.88e-11	65.5