Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0202 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTTGGGGTGCTTTATCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCATTTGATGAGAACCAAGGCTTAGCTACTACTACTTTGAACCCTTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGTCCTTATTATGGAAGTGAAGCAGCAATAGCATACCCTTTTGTTGATGGCTTCACATTGCCTGAGCTTGATTCATCAGCACCACTTTTGGCACATGAAGATAACAACAACAACAACAACCCATCATTGGAGGATGAAGAGTTTGGTTTTCTGGGAGGAAGTGATAACCAGAGTTTGGAACAACCAATACTTGGCTGCAAAATTGAGGAACAAGTCATGTCCACAGAGATTCCAGTCTTCAACATGGGCTTGTGTGGAGAGAAAAAGCCCAAATCAAAGAAACTTGAAGGGCAGCCCTCAAAGAATCTAATGGCAGAAAGAAGAAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCTAAGATTAGCAAGATGGACAGGACATCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTCCTAGAAAGGATAGGCAAGTTGCAAGAAGAAGAAATGGGGGAGGGAACAAATCAGATAAACCTCTTAGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTACTACAAAGCCAGGATTGCTACTGTCCACAGTGAATACTTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAACCGAGCAGAGAAATTGTATGAGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 1014 0.4231 MELSQLGFLDELLAPRKDTWGALSTGLNELLPSGWSFDSFDENQGLATTTLNPSFAAFSTPLDHRFECPYYGSEAAIAYPFVDGFTLPELDSSAPLLAHEDNNNNNNPSLEDEEFGFLGGSDNQSLEQPILGCKIEEQVMSTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMGEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCTTKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEVTEQRNCMSPEEIKQALFRNAGYGGRCL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0202 337 MobiDBLite consensus disorder prediction 97 111 - -
Aed6g0202 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Aed6g0202 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Aed6g0202 337 CDD ACT_UUR-ACR-like 263 304 - -
Aed6g0202 337 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Aed6g0202 337 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 337 - -
Aed6g0202 337 Gene3D - 156 227 IPR036638 GO:0046983
Aed6g0202 337 MobiDBLite consensus disorder prediction 97 118 - -
Aed6g0202 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 337 - -
Aed6g0202 337 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0202 Aed-Chr6 1761308 1763034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0202 26 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.951 6.03e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g0202 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0202 - - gmx:100806571 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0202 6 1761308 1763034 Aed7g1513 7 17398258 17401915 PCT