Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0199 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGAGGGGCGGAGCAAGGTGTCGTCGACCGTGACGTCCGGTTGTTCTTCGCAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTACTTAGGGTTGTCTGATTGTTCGTCAGTGGATAGCTGTGCTTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAAGAGAACATGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCCGGATCCCAATCGCCTGAAAGGGAGCCGGATCTTTTCTCTTTAAGCTCAGCAAAGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACTAAAGACGGGATATGCTCGTCGGTGCAGAAAACTGTTGTTTCTGGCAATAAAAGAGGTTTTGCTGATACCATGGATGGCTTTCCTCAGGGGAAGTTTGGTGGTAATACAGGGATGAACGCGATGCTATCACCCAGGGCTTCTGGAGCTCAGCCTTCTGCTATGAAGGAAATTCCAAGCAAGTTGCAAGAAAGGCCTTGTTCAACTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCACCACCACTAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGTTGGTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTGAGAAGCTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAGTGTTGAGTGAGAGCAAGCTGAGGGATCTTCTACACGGTTCTGAGTATGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCCTGGGAGATGTTCACTGACACTTGCAAAAGGCTGAAAATTATGAAGGGTTCCGATGCCATTGGTTTAGGTATCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAGGGTATCATGTACTGCCTTTTGTCTAA 1107 0.4779 MSPPAVVTEEEGRSKVSSTVTSGCSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSSAKLDEKPLFPLLPTKDGICSSVQKTVVSGNKRGFADTMDGFPQGKFGGNTGMNAMLSPRASGAQPSAMKEIPSKLQERPCSTNNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREVLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLGISQGHGKVQKQELGYHVLPFV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0199 368 MobiDBLite consensus disorder prediction 12 28 - -
Aed6g0199 368 ProSiteProfiles PB1 domain profile. 238 342 IPR000270 GO:0005515
Aed6g0199 368 SUPERFAMILY CAD & PB1 domains 237 339 - -
Aed6g0199 368 Gene3D - 234 352 - -
Aed6g0199 368 MobiDBLite consensus disorder prediction 1 28 - -
Aed6g0199 368 Pfam AUX/IAA family 76 347 IPR033389 -
Aed6g0199 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 351 IPR003311 GO:0005634|GO:0006355
Aed6g0199 368 PANTHER AUXIN-INDUCED PROTEIN 20 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0199 Aed-Chr6 1738251 1742011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0199 240 347 B3 DNA Binding Superfamily AT5G37020 32.407 5.68e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed6g0199 AUX_IAA 1.2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0199 K14484 - gmx:547502 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0199 6 1738251 1742011 Aed7g1504 7 17244360 17250584 PCT