Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0188 ATGAATCTGTGGACGGACGAGAACTCATCGATGATGGAGGCCTTCATGTCGTCCTCCGATCTCTCCTCGATCTGGCCCCCGCCGGCTCCGCCTCAATCCACGTCGGTCTTCAATCAGGACACGCTCCAGCACCGCCTCCAGGCGCTGATCGAGGGCGCCAGAGAGAGCTGGACCTACGCTATATTCTGGCAGTCTTCCTATGACTATTCTGGTTCCACGCTCCTCGGTTGGGGCGATGGTTACTACAAAGGAGACGACGACAAAGCCAAGGCAAAGGCCAAGGCTAAAGCTACCTCCGCCGCCGAGCAGGACCACCGCAAAAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCCTCCTCCGCCGCCTCCGACGACGTCGACGAGGAAGTCACTGACACCGAGTGGTTCTTCCTCGTCTCCATGACTCAGTCCTTCGTCAACGGTGGAGGCCTTCCCGGACAAGCCTTCTGCAACTCCACACCGGTTTGGGTCACCGGCGGCGACCGTCTCTCCGCCTCGCCCTGCGAGAGGGCCAGGCAGGGACAGGTCTTCGGGCTGCAAACCCTAGTTTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGGGTCCACTGAGTTGATTTTCCAGAACCCGGATCTGATGAACAAGGTGAAGGTTCTCTTCAATTTTAGCAACAACAACTTCGACATGGGTTCTTCATGGCCCGCCACCAGCGCCGATCAAGGCGAAAACGACCCTTCCTCGCTCTGGCTCAGCGATCCCGAAGTTAGGGATTCCATTCACACTGTTGCGCCTACACCTTCGGTTTCGGTTCCTGCACAGACTCAGGGGATTTCCATTTCCAAGACGATTCCTCAGTTGGAGAACTCTATTCAAACCCCGGGTTCCAGCACTTTAACCGAAACTCCTAGTTCTATTCACGCGATTCCGCAGAACCAGAGCGTCTTCTCCAGAGAATTAAACTTTTCAGAGTACAGTTTTGACCCAAAGACTGCCAACAATCACAACCAGCATTCTCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGAACCTCCTATGCCGGCGTCAATGGGAACACCAATTCCAATTTTTTCTCCGGTCAGTCACCGTTTGTTGCTGCTGTGGACGAGAACAACAACAACAACAACAACAACAATAACATTAACAATGGGAAGAAAAGGTCGCCGAATTCGCGCGGCAGCAACGACGACGGAATGCTTTCTTTCACCTCCGGCTCGATTCTTCCGCCCATGAATTTGAAGTCCGGCGGCGGCGGCAGCGGCGATTCCGACCACTCGGATCTGGAAGCTTCGGTGGTGAAGGACCCAGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGGAGAGAAGAACCACTAAACCACGTTGAAGCAGAAAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTATGCGCTTCGTGCTGTGGTTCCCAACGTGTCAAAGATGGACAAAGCGTCACTTCTCGGCGACGCAATATCCTACATCACGGAGCTGAAGTCCAAGCTTCAGTGTCTAGAGTCAGATAAAGATGGGTTGCATAAGGAGCTCGAAGGAGTGAAAAAGGAACTCGAGAAAACAACCGAAAACGTTTCTTCTAATCACGAGAGTAATAATAACAACAGCAGTAGTAATAGTAATAATAACAAGTTGTCGAGTCAGGCGTTGTTTGAAGTGGACATCGACGTGAAGATAATTGGGTGGGACGCAATGATAAGGGTCCAAAGCAGCAGAAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGAAGTTAACCACGCCAGCGTGTCGGTGGTCAATGACTTCACGATCCAACAAGCAACGGTGAAGATGGGGAGCAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCGCTGTCGGCTAAGGTTGGGGATGTACGATGA 1980 0.5414 MNLWTDENSSMMEAFMSSSDLSSIWPPPAPPQSTSVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSSAASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFCNSTPVWVTGGDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSSLWLSDPEVRDSIHTVAPTPSVSVPAQTQGISISKTIPQLENSIQTPGSSTLTETPSSIHAIPQNQSVFSRELNFSEYSFDPKTANNHNQHSLKPESGEILSFGESKRTSYAGVNGNTNSNFFSGQSPFVAAVDENNNNNNNNNNINNGKKRSPNSRGSNDDGMLSFTSGSILPPMNLKSGGGGSGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQCLESDKDGLHKELEGVKKELEKTTENVSSNHESNNNNSSSNSNNNKLSSQALFEVDIDVKIIGWDAMIRVQSSRKNHPAARLMAALMELDLEVNHASVSVVNDFTIQQATVKMGSRFYTQEQLRSALSAKVGDVR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0188 659 PANTHER TRANSCRIPTION FACTOR MYC2 32 655 - -
Aed6g0188 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Aed6g0188 659 MobiDBLite consensus disorder prediction 381 480 - -
Aed6g0188 659 PANTHER MYC 32 655 IPR045084 GO:0003700|GO:0006355
Aed6g0188 659 Gene3D - 462 552 IPR036638 GO:0046983
Aed6g0188 659 MobiDBLite consensus disorder prediction 551 569 - -
Aed6g0188 659 MobiDBLite consensus disorder prediction 544 569 - -
Aed6g0188 659 Pfam Helix-loop-helix DNA-binding domain 474 519 IPR011598 GO:0046983
Aed6g0188 659 MobiDBLite consensus disorder prediction 381 424 - -
Aed6g0188 659 CDD bHLH_AtAIB_like 467 543 - -
Aed6g0188 659 SMART finulus 476 525 IPR011598 GO:0046983
Aed6g0188 659 MobiDBLite consensus disorder prediction 441 480 - -
Aed6g0188 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Aed6g0188 659 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 538 IPR036638 GO:0046983
Aed6g0188 659 Coils Coil 516 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0188 Aed-Chr6 1628264 1630243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0188 1 656 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.757 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g0188 bHLH-MYC_N 6.8e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0188 K13422 - gmx:100776289 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0188 6 1628264 1630243 Aed6g0188 6 1628264 1630243 ECH