Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0187 ATGGCTTCTGATGATAAGAACATTGTGTTCGAAAGCTCAAGGCAAAGTCTGAAAACAAGGTTTCTCATTATTTACCCTCCTCTGTTATTATGTGTTGTGTATGTTCATGTTCACATCCCCACTTGCATTTTGTTTCAGATGTGTTTCGATTGTAATGCAAAGAACCCAACTTGGGCCTCCGTCACCTATGGGATATTCCTCTGCATCGATTGCTCTGCTGCACACCGTAGTCTCGGTGTCCATATCAGTTTTGTTAGGCAAGTTCTGCTTTTTATTGTTGCTATGTTGAACATTTATAATCTGAGATCTACAAATTTAGACTTATGGAGTCTGGAGCAATTGAGAATGATGACTTTTGGAGGAAACAACCGTGCACGGTCTTTCTTTAAGCAACATGGTTGGACTGATGGTTGCAAAGTAGAGGCTAAATATACATCAAGAGCTGCAGATTTATATAAACAGATTCTTTCCAAGGAAGTAGCTAAAAGTATGATTGGGGAGGTAGGTTTACCACCATCATCACTTTTTGCTTCTCAGTCTGAAGAAGTTGCTAAAGAACTTTCTCAAGTGAAGACCAATGAAATACCAAAGGAAAATACTTTTTGGTAA 609 0.3875 MASDDKNIVFESSRQSLKTRFLIIYPPLLLCVVYVHVHIPTCILFQMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRQVLLFIVAMLNIYNLRSTNLDLWSLEQLRMMTFGGNNRARSFFKQHGWTDGCKVEAKYTSRAADLYKQILSKEVAKSMIGEVGLPPSSLFASQSEEVAKELSQVKTNEIPKENTFW 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0187 202 PRINTS HIV Rev interacting protein signature 45 64 IPR001164 GO:0005096
Aed6g0187 202 PRINTS HIV Rev interacting protein signature 64 81 IPR001164 GO:0005096
Aed6g0187 202 PRINTS HIV Rev interacting protein signature 101 122 IPR001164 GO:0005096
Aed6g0187 202 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 46 200 - -
Aed6g0187 202 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 154 IPR001164 GO:0005096
Aed6g0187 202 SMART arf_gap_3 36 165 IPR001164 GO:0005096
Aed6g0187 202 Gene3D Arf GTPase activating protein 45 169 IPR038508 -
Aed6g0187 202 SUPERFAMILY ArfGap/RecO-like zinc finger 46 164 IPR037278 -
Aed6g0187 202 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 46 200 - -
Aed6g0187 202 CDD ArfGap_ArfGap2_3_like 46 162 - -
Aed6g0187 202 Pfam Putative GTPase activating protein for Arf 46 145 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0187 Aed-Chr6 1618344 1619013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0187 46 130 C2H2 Transcription Factor Family AT4G05330 38.372 1.90e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0187 K12493 K11855 zju:107430589 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0187 6 1618344 1619013 Aed6g0187 6 1618344 1619013 ECH
Aed6g0187 6 1618344 1619013 Aed7g1472 7 16082494 16088754 PCT