Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0178 ATGGCTACTTTAGAATCAGCGCTGACCCTGTTCGCACCTCAACGGTTTTCCAATAACTATCGTGTCTCTGCAAAAGCACCAATCTCCATAAAGCTCCATGCTTCCAGCACCACGTCCCTTCTCTTCTCATCTTCCAAGTCCTCTTTCAGAACCGAAAGACTCTGCTTCCAGTTATGCTCCTCCACTTTGCAAGAAGTAGCCACAACAATAGACAACGTAAAGAAGCTCTACGTGGTTAACATGACTTGGTCTGTGTCTGCGGCAGACATCAAGGACCTCTTTGCCCAATGCGGAACCGTAATTGACGTCGAGATAATAAAGAACAAAGATGGGAGGAGCAAGGGCTATGCCTTCGTTACCATGGCTTCCGGGGAAGAGGCTCAGGCTGCTCTTGATAAATTTAACTCTTATGAATTATCCGGACGGATAATAAGGGTAGAACTTGCCAAGAATTTCAACAAACCTTCGCCTCCTCCACCTCCTCCACGTCCCCGTCCGGGAGAGACACGTCATGTAGTTTATGTATCGAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTCTCTGAAAATTTCAAAACACCATCTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACAATCTGCTGGTTACGGATTTGTTTCTTTTATTACCAAGGAGGATGCAGAGGCTGCCATTTCTACTATGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAGTTCAGTGAAAAGAAAGATAAAGAAGCTGGAAGTGAAAAAGATGAAGACCAAGTTAAAGATGGTGGAAGTGAAGAAGATGAAGACCAAGGTTCTGATGCTCAACCGGAAGAATCATAA 855 0.4561 MATLESALTLFAPQRFSNNYRVSAKAPISIKLHASSTTSLLFSSSKSSFRTERLCFQLCSSTLQEVATTIDNVKKLYVVNMTWSVSAADIKDLFAQCGTVIDVEIIKNKDGRSKGYAFVTMASGEEAQAALDKFNSYELSGRIIRVELAKNFNKPSPPPPPPRPRPGETRHVVYVSNLAWKARSTHLRQVFSENFKTPSSARVVFDSPSGQSAGYGFVSFITKEDAEAAISTMDGKELMGRPLRLKFSEKKDKEAGSEKDEDQVKDGGSEEDEDQGSDAQPEES 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0178 284 PANTHER OS02G0815200 PROTEIN 10 267 - -
Aed6g0178 284 SMART rrm1_1 172 246 IPR000504 GO:0003723
Aed6g0178 284 SMART rrm1_1 75 147 IPR000504 GO:0003723
Aed6g0178 284 Gene3D - 155 263 IPR012677 -
Aed6g0178 284 Gene3D - 60 154 IPR012677 -
Aed6g0178 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 244 IPR000504 GO:0003723
Aed6g0178 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Aed6g0178 284 MobiDBLite consensus disorder prediction 241 284 - -
Aed6g0178 284 PANTHER CHLOROPLAST, PUTATIVE-RELATED 10 267 - -
Aed6g0178 284 SUPERFAMILY RNA-binding domain, RBD 69 167 IPR035979 GO:0003676
Aed6g0178 284 MobiDBLite consensus disorder prediction 241 264 - -
Aed6g0178 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 250 IPR000504 GO:0003723
Aed6g0178 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Aed6g0178 284 SUPERFAMILY RNA-binding domain, RBD 153 253 IPR035979 GO:0003676
Aed6g0178 284 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0178 Aed-Chr6 1553493 1555533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0178 64 252 Eukaryotic Initiation Factors Gene Family AT4G34110 27.670 8.58e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0178 - - gmx:100793319 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0178 6 1553493 1555533 Aed6g0178 6 1553493 1555533 ECH