Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0177 ATGGCTTCTCTAGGCAACCCAAAAACTTGGGTTCCATACATGAACAACAAAGACTGCTCTCAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCATTTGAATTTCCCGATGATGATACTTCTTCAAGTCCAAATTTCTCACCTTTAGTTATTGCAGTCATTGGGGTCTTAGCAAGTGCTTTTCTCCTTGTGAGCTACTACACCATAATATCAAAGTATTGTGGCAGCAGAGAATCTTCACAGAGCGAATACACAGAAGAAAACATCGAATTGGAAGAGGATCACAACAACCCTTCACTCCACGAGCCTTGGCATGCTTCAACCATTGGCTTAGACGAGGCTTTGATTAAGGCTATAACAGTTTGCAAGTACAAGAAAGGTGATGGCTTGGTCGAGGTGACAGATTGCTCCGTTTGTCTCAGCGAGTTTCAAGAAGATGAAAGCGTTAGGCTCTTACCAAAATGCAGCCACGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAGTCTCACTCTAGTTGCCCTCTGTGTCGTGCTAGCATATTCACCTTCAATACTTCTGCTGCAGCACTTGCTCATGTTGCTGCACCAGTCATCATGGAAGAACCACCCTCTTCAAGGATGAACGAAACTTCTCCACAAAACCAACAACTTGCAGATGAAAACGTTGCTGTTGATCAATTTGATGATGCTGTGGAAGGAGAAGAAGTCATAACACATAGTGGAGCAGTTTCTAAGAGTACTACTGCATTGCGTGCTTTGAGTGATCTAGGCAATTTGAGAGGGAGGCATAGTGTAATTGAGATTATTAGAGATGAAGGCTATGATTCCATTAGAAGGACAGTTTCTATGGACCATTCGTTTCAAAGGGGTAGTGCTACTCTTTCAATTGCTGATGTTATGCATGTGAATCAAGAAGAGCATGAAGGGTGTTCTAATGGGGCTGTTGGTTCTTCAAAGGGATCAAGAGCTTTGCTCCAAGCTCTGCATCAACTTATCACCGTCATGGATAATGCACACTTTCTTTCTAATAATACTTTCCCGTAA 1074 0.4292 MASLGNPKTWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPDDDTSSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGSRESSQSEYTEENIELEEDHNNPSLHEPWHASTIGLDEALIKAITVCKYKKGDGLVEVTDCSVCLSEFQEDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNTSAAALAHVAAPVIMEEPPSSRMNETSPQNQQLADENVAVDQFDDAVEGEEVITHSGAVSKSTTALRALSDLGNLRGRHSVIEIIRDEGYDSIRRTVSMDHSFQRGSATLSIADVMHVNQEEHEGCSNGAVGSSKGSRALLQALHQLITVMDNAHFLSNNTFP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0177 357 Pfam Ring finger domain 144 187 IPR001841 -
Aed6g0177 357 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 251 IPR044675 -
Aed6g0177 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 251 - -
Aed6g0177 357 SMART ring_2 145 186 IPR001841 -
Aed6g0177 357 CDD RING-H2_PA-TM-RING 144 187 - -
Aed6g0177 357 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Aed6g0177 357 SUPERFAMILY RING/U-box 144 193 - -
Aed6g0177 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0177 Aed-Chr6 1547878 1549404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0177 1 329 C3H Transcription Factor Family AT3G03550 42.017 6.39e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0177 - - gmx:100792267 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0177 6 1547878 1549404 Aed6g0177 6 1547878 1549404 ECH
Aed6g0177 6 1547878 1549404 Aed7g1466 7 15618052 15619161 PCT