Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0176 ATGATATCATCCAAGTACGATGTGGTCTTTGCGACAATCAAAGCGGAGAACTCCGAAACCCTACTACTTCCACCGCCACCGCCAGCGTCGGCGCAAATAAACCCATCGACGCTGATACTGTTCTCCGTGGCGGTGGTGGTAATCTGCTTCGTGGGTTTCGCCATTCTCTGCCTCTGCAGGTGCTGCTTCGTGAGCATAAACTCGACCACGCTGGTTCATCTCTCTCCCTGCGCTTCTCCCGTCAGAGGCCTCGAGCCTTCGCTGCTGCAGGCGTTCCCCACGTTCCTCTACTCCACCGTGAAGGACCTCCGCAAAGAGCAGAAGTACTCGCTGGAATGCGCCATTTGCTTGCTGGAGTTCGACCACGACAGCATGCTCCGACTCTTGACCGTTTGCTACCATGTCTTCCACCAGGAGTGCATCGATCTGTGGCTTCATTCACACAAGACGTGTCCTGTCTGCCGCACGGATCTCGAGGCAATGACAGCAAACGACAACGAGGCTCCGGAACAAAACGAGGACAACGCGGAATTACAAGGCAGCACGAGTCATCAGCACGTGTGCATTGATATTGTGAATGAAGGTGATCGTGATCAGAGACATCACGATGTTGATGAGGGTGCGAGCATGCAGGAGGAACAGAAGATTGAGTTTGCACGGTCACACTCAACGGGGCATTCAATAGTTATGGTTAGAGGTGAAGGGAGAAATGATGATAAGTATACGTTGAGGTTGCCGGAGAATGTGGCGTTGAAAATTGTGAAGGGAGGGCACAGCTACTCAAAGAGTTGTTCTAGTTCCAAAGATATTGCAAGGCTTCATGCTGCTGCTGCGCCTTGCAAGAATTGTGGTTATGTTCAAACTGTATTTCACACCTCACCCTCATCCCGTAATAAGCCTACGAAAAACAGTTAA 915 0.5126 MISSKYDVVFATIKAENSETLLLPPPPPASAQINPSTLILFSVAVVVICFVGFAILCLCRCCFVSINSTTLVHLSPCASPVRGLEPSLLQAFPTFLYSTVKDLRKEQKYSLECAICLLEFDHDSMLRLLTVCYHVFHQECIDLWLHSHKTCPVCRTDLEAMTANDNEAPEQNEDNAELQGSTSHQHVCIDIVNEGDRDQRHHDVDEGASMQEEQKIEFARSHSTGHSIVMVRGEGRNDDKYTLRLPENVALKIVKGGHSYSKSCSSSKDIARLHAAAAPCKNCGYVQTVFHTSPSSRNKPTKNS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0176 304 PANTHER RING-H2 FINGER PROTEIN ATL29 24 271 - -
Aed6g0176 304 Pfam Ring finger domain 112 155 IPR001841 -
Aed6g0176 304 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Aed6g0176 304 SMART ring_2 113 154 IPR001841 -
Aed6g0176 304 PANTHER RING FINGER DOMAIN-CONTAINING 24 271 - -
Aed6g0176 304 CDD RING-H2_EL5_like 112 155 - -
Aed6g0176 304 SUPERFAMILY RING/U-box 105 161 - -
Aed6g0176 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0176 Aed-Chr6 1544459 1545373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0176 31 255 Rapid Response to Elicitors AT3G05200 35.021 2.45e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0176 - - gmx:102667137 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0176 6 1544459 1545373 Aed7g1456 7 15165777 15166772 PCT