Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0171 ATGGGTAAGAAGAAACTAAAGGACCCGCAACAATCCTCTGAAACCGACACCGTTTCAACCTCTTCGAGCATTTTCAGCAAGCTCTTTTCCATCGCGCCAGAACAGACCACCGCAACCGCCGCCTCTCTATTTTCCGATGACAACCCCTTTCGGAGAAAACCCGCTTCACTTTCCGACTCAACAAACCTCACTCATAGTCGTAACAAAGGCGACCGCCCCGTGAACGCCGCCGATTCCGGCGAGGAGAAGAAGCGGAAGAGGAACAAGGACAAAACGCCATCCACAGAACCAGCCCTAGATCCCGTTTCCGTAATCGAAGCTTCGCAGAAATCGGAGAAGAAGAGGAAACGCGATTCGGATGAAGGAAGAGACGTTAATGTGGGCGCAAAAGCAATTGGGAAGAGGAAAAGGAAAAGGGAGGAAGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGGCTGCGGAGGAACGGATTGAGAATAAAATTGTTGGGATAAAGAGGAAGGCTTTGGATGATCCAGCTGTTATGATGGTTTCAAAGGAGGGTTTTGATGATGAGGATAAGCTTCTGAGGACTGTTTTTGTTGGGAATTTGCCCCTCAAGGTGAAAAAGAAGACTCTTTTGAAGGAGTTTAAGAAGTTTGGCGAGGTTGAGTCCGTGAGGGTTCGTTCTGTCCCAATACAAGATACCAAGAAGCCTAGAAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCGTACATTGTTTTCAAAACCGAGCAATCAGCACAGGCTTCTTTGTCACACAACATGTCACTGGTTGAAGGAAAACACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAGACTCAAAGGGGAGAGTGCTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGCATATCCAACCTGGCATCACTTATAGAAGCTGTCAGAGTTGTTCGGGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTGTTAAGAAACGGAACTTGAAGCTTCGAGACCGGGAGTTGAGACTCAGTCATGCCAAAGCAGATGCAACCCCATCTAAAAGGCCAAATCCATCATCAGAACATGCTCCTAGCACCCCTGCAAAAAGGCCAAACACGTCGTCATCACCACATGCTCCTAGTAGAACCCCTGCAAAGAGGTTTTCTGTGGCTTCAAGGTCTCCTTCAAGCAGCAATAACAGGTCAAACAAAACAAGCAATGCATCTTATCAGGGTCTACGTGCTACCAAATCTGATGTGCAAAAGAAAATCCAAAGAGGAGGAGAAAAACCTAAAGAGCGCCAGACAAAAAGACCTTCAGTAGCTGCCCGAAAGGCCAAAGCAAATTTGGTGAAGGAGAGTGGTCCACCAAAACAAGCAGCAGGGGTCAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCTTACGTAATAGGAAAGTCAAAAAGAACAGGTAG 1566 0.461 MGKKKLKDPQQSSETDTVSTSSSIFSKLFSIAPEQTTATAASLFSDDNPFRRKPASLSDSTNLTHSRNKGDRPVNAADSGEEKKRKRNKDKTPSTEPALDPVSVIEASQKSEKKRKRDSDEGRDVNVGAKAIGKRKRKREEVEKEWEEKKYGAAEERIENKIVGIKRKALDDPAVMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRVRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGKHIRVDRACPPRKRLKGESAPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLASLIEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVVKKRNLKLRDRELRLSHAKADATPSKRPNPSSEHAPSTPAKRPNTSSSPHAPSRTPAKRFSVASRSPSSSNNRSNKTSNASYQGLRATKSDVQKKIQRGGEKPKERQTKRPSVAARKAKANLVKESGPPKQAAGVKRKLDSRTPDSTLRNRKVKKNR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0171 521 MobiDBLite consensus disorder prediction 54 69 - -
Aed6g0171 521 MobiDBLite consensus disorder prediction 71 94 - -
Aed6g0171 521 MobiDBLite consensus disorder prediction 376 521 - -
Aed6g0171 521 PANTHER RNA-BINDING PROTEIN 34 45 519 - -
Aed6g0171 521 Gene3D - 187 289 IPR012677 -
Aed6g0171 521 SMART rrm1_1 303 380 IPR000504 GO:0003723
Aed6g0171 521 SMART rrm1_1 192 281 IPR000504 GO:0003723
Aed6g0171 521 CDD RRM1_RBM34 191 281 IPR034220 -
Aed6g0171 521 Gene3D - 291 402 IPR012677 -
Aed6g0171 521 MobiDBLite consensus disorder prediction 389 454 - -
Aed6g0171 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 285 IPR000504 GO:0003723
Aed6g0171 521 SUPERFAMILY RNA-binding domain, RBD 191 382 IPR035979 GO:0003676
Aed6g0171 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 384 IPR000504 GO:0003723
Aed6g0171 521 MobiDBLite consensus disorder prediction 455 476 - -
Aed6g0171 521 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g0171 521 MobiDBLite consensus disorder prediction 40 149 - -
Aed6g0171 521 MobiDBLite consensus disorder prediction 107 149 - -
Aed6g0171 521 CDD RRM2_RBM34 303 380 IPR034221 -
Aed6g0171 521 MobiDBLite consensus disorder prediction 499 515 - -
Aed6g0171 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 235 IPR000504 GO:0003723
Aed6g0171 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 378 IPR000504 GO:0003723
Aed6g0171 521 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 519 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0171 193 383 Eukaryotic Initiation Factors Gene Family AT1G22760 26.289 5.57e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0171 K14837 - gmx:100809622 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0171 6 1510251 1514712 Aed6g0171 6 1510251 1514712 ECH