Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0168 ATGGGAAGGTCACCACGTTGTGATGAGGAGAGTAGTAGTAATGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAAAAGCTGATTGATTATATCAGCAAACATGGCCATGGCAGTTGGAGAACACTTCCAAAGCGTGCAGGTCTCAATAGGTGTGGTAAGAGCTGCAGATTAAGATGGACTAACTATCTCAGGCCTGATATCAAGAGAGGCAAATTCTCTGAAGAAGATGAGAGGATCATCATCAACCTTCATTCAGTCCTCGGAAACAAGTGGTCGAAGATTGCAGCACATCTGCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACTAACATAAGGAAAAAGCTTCTGAAGATGGGAATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCATCAAACTTGAGCAATATTAATGCTATGAACACCACTTGGGGCAATAACCCTCTAGGTTTACAAGCAGATATCAACCAGCTAGCCAAAATTCAACTTCTTCAAAATCTGTTGCAACTTATGAACAACAATTCATTTGTTAACATGGCTAATAACCCTTATCTCTTAGGCAATCCCAACCTCAACCCTTTATTTCTAAACGGGTTAAACTTAAACCCCCTTCATACCAAGGAGCCTGTGGTGTTGAGTGGTGGTAGTGAAGAATATGCTAACCATGGTTTAAACACTCAAGCACAAAGTGAGTGCTCTCAGAAGGATGTTTCAAAATCATTGGCAGATCCTGATTACTACAAAATTAACATCACTACTACTACTTCACGTGAAAACCAAGCAGAAAATATTCCACTTCCTGCATTAGTTGCATCCTCTCCAAAGATGGGAACCAGCTTCAACCAAATGGATAGTGGCTGTAATAACATAGCTCAAATGTCTACAGAGTCACCACCTTCCAACACTTTCTTTGATGATTGGGAGAAGCTGATGGTTGACGATGAAACAAGCGGTTCCTATTGGAAAGAGATTCTAGAGTAA 1032 0.4089 MGRSPRCDEESSSNVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEDERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTNIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSSNLSNINAMNTTWGNNPLGLQADINQLAKIQLLQNLLQLMNNNSFVNMANNPYLLGNPNLNPLFLNGLNLNPLHTKEPVVLSGGSEEYANHGLNTQAQSECSQKDVSKSLADPDYYKINITTTTSRENQAENIPLPALVASSPKMGTSFNQMDSGCNNIAQMSTESPPSNTFFDDWEKLMVDDETSGSYWKEILE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0168 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Aed6g0168 343 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Aed6g0168 343 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Aed6g0168 343 CDD SANT 72 115 IPR001005 -
Aed6g0168 343 PANTHER MYB TRANSCRIPTION FACTOR 1 343 - -
Aed6g0168 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Aed6g0168 343 CDD SANT 19 64 IPR001005 -
Aed6g0168 343 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Aed6g0168 343 Gene3D - 16 69 - -
Aed6g0168 343 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g0168 343 Gene3D - 72 138 - -
Aed6g0168 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Aed6g0168 343 SMART sant 16 66 IPR001005 -
Aed6g0168 343 SMART sant 69 117 IPR001005 -
Aed6g0168 343 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Aed6g0168 343 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0168 Aed-Chr6 1485154 1486462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0168 1 343 MYB Transcription Factor Family AT5G16770 46.067 2.11e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed6g0168 Myb_DNA-binding 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0168 K09422 - gmx:100810159 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0168 6 1485154 1486462 Aed6g0168 6 1485154 1486462 ECH