Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0167 ATGTCAGACCGGGGTACCCTCTCCGGTGACTCGGCCGTGGATAGTAATGCTAAGAATATCAGCAGCAAAAAGGAACACAGAGTTTCTCTGCTGAAATTGTTTTCTTTTGCTGACTTCTATGACCATGTCTTAATGGCGATTGGATCTGTTGGGGCAATTGTACATGGTGCTTCTGTTCCAGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAGCGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAATCAATGTTGAATCAAGATATTAGCCTTTTTGATACAGAGGCTTCAACAGGAGAGGTTATTTCTGCCATTACTAGTGACATTATCATTGTTCAAGATGCACTCTCTGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCGGGGTTTGTTATTGGGTTTGTTAGAGTGTGGCAGATTAGTCTAGTCACACTTTCAATTGTCCCATTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCTAAAGTTCGAAAAGCCTACGTGAGAGCCGGTGAAATCGCTGAAGAGGTTATAGGCAATGTTAGAACAGTGCAAGCATTTGCAGGAGAAGAAAGAGCAGTAAGATCATACAAAGCGGCTCTGATGAAAACTTACGTAAATGGTAGAAAAGCTGGTTTGGCAAAGGGACTGGGCCTGGGGTCAATGCATTGCGTTCTTTTTCTATCTTGGTCTTTGCTTGTTTGGTCACTGGGGCAGGCAGCACCAGATATCTCTGCATTCATTCGAGCAAAGGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAACCGGTCGCAAGTTAGCCAAATTGGAGGGTCACATCCAGTTTAAGAATATCGGTTTCAGTTACCCATCTCGTCCTGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTGGCCCTTGTGGGAGGAAGTGGCTCTGGAAAGAGCACAGTCGTATCATTGATTGAACGCTTTTATGAGCCACTTTCTGGTCAGATACTACTAGACAGGAATGACATCAGGGAACTGGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCTCTTTTCGCTACAAGCATCAAGGAGAACATACTCTATGGCAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCGACAAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTCATGATTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTGCAGGGTGGGAAGATTGTGGAAACTGGTAACCATGAAGTGCTCATGGCCAACCCAACTAGTGTATATGCTTCTCTTGTTCAACTCCAGGAGGCTGCTTCTCTGCAGCGGCTACCATCAGTTGGTTCTAGCTTGGGACGCCAACCAAGCATAACCTACTCAAGAGAGTTATCTCGTACAACAACAAGCCTTGGCGGTAGTTTTCGATCAGATAAAGAATCGATTGGCCGGGTTTGTGCTGAAGAATCAGAAACTGGAAGCAAGAAAAGGCATGTTTCAGCAGCAAGGCTGTACTCTATGGTTGGCCCTGACTGGTTTTATGGGGTTGCTGGGACCTTATGTGCATTCATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTATATGGACTGGGAGACAACATGTCATGAAGTTAAAAAAATTGCATTCCTCTTCTGTGGAGCAGCAGTTATAACTATCACGGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAACGACTTACCCTTCGTGTCAGAGAAATGATGTTTTCTGCTATCTTGAAGAATGAAATCGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCACAGTTAGAGACTGATGCAACTTTATTACGAACTATAGTTGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGTTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCTGGTGAGGCTGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATTCTAATGAGCTTGTTGATCCCTCCAAACGCTCACTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGAAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGGCATTTTTTGTTTTGATAGTAACAGCACTCGCCATGGGGGAGACACTGGCCCTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCGGTTTTTGAAGTGATGGATAGAAAGTCAGGAATATCATGTGATGTTGGAGAAGAGTTGAAGACAGTGGACGGAACAATTGAGCTCAAGAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAACCTAAGAGTTCCTGCAGGCAAGAGTTTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGAAGGGTGTTAATTGATGGAAAAGACATCACAAGACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAACATACTTTATGGAAAAGAGGGTGCATCTGATTCAGAAGTGATTGAAGCAGCTAAGCTTGCAAATGCTCATAACTTCATCAGTGCTCTTCCTGAGGGATACTCCACCAAAGTAGGTGAGAGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATAGCAAGAGCTGTTCTAAAGAATCCTGAAATATTGCTACTTGATGAAGCCACTAGTGCACTTGATGTTGAGTCAGAGCGTGTGGTGCAGCAAGCATTGGACAGATTAATGCAGAACAGAACAACAATTATGGTGGCACATAGGCTATCTACTATAAGAAATGCAGACCAAATCTCAGTTTTACAAGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGACCATACTATAAATTAGTCAACCTTCAACAACAACAGCATCAATTATAG 3582 0.4232 MSDRGTLSGDSAVDSNAKNISSKKEHRVSLLKLFSFADFYDHVLMAIGSVGAIVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLAKLEGHIQFKNIGFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVVSLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEVLMANPTSVYASLVQLQEAASLQRLPSVGSSLGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEESETGSKKRHVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYSNELVDPSKRSLQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGISCDVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSFALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTIMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGPYYKLVNLQQQQHQL 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0167 1193 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 630 916 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g0167 1193 CDD ABC_6TM_Pgp_ABCB1_D1_like 45 314 - -
Aed6g0167 1193 Gene3D ABC transporter type 1, transmembrane domain 848 1190 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 459 1189 - -
Aed6g0167 1193 ProSitePatterns ABC transporters family signature. 1088 1102 IPR017871 GO:0005524
Aed6g0167 1193 Pfam ABC transporter 968 1116 IPR003439 GO:0005524
Aed6g0167 1193 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 292 - -
Aed6g0167 1193 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 294 459 IPR039421 -
Aed6g0167 1193 SMART AAA_5 976 1162 IPR003593 -
Aed6g0167 1193 SMART AAA_5 368 526 IPR003593 -
Aed6g0167 1193 Pfam ABC transporter transmembrane region 632 902 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g0167 1193 Pfam ABC transporter transmembrane region 47 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g0167 1193 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 292 IPR039421 -
Aed6g0167 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 943 1187 IPR027417 -
Aed6g0167 1193 Gene3D - 459 559 IPR027417 -
Aed6g0167 1193 Gene3D ABC transporter type 1, transmembrane domain 561 797 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 Gene3D - 331 458 IPR027417 -
Aed6g0167 1193 Gene3D - 939 1188 IPR027417 -
Aed6g0167 1193 Pfam ABC transporter 360 480 IPR003439 GO:0005524
Aed6g0167 1193 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g0167 1193 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 294 459 - -
Aed6g0167 1193 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 459 1189 IPR039421 -
Aed6g0167 1193 SUPERFAMILY ABC transporter transmembrane region 617 930 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 SUPERFAMILY ABC transporter transmembrane region 33 296 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 949 1185 IPR003439 GO:0005524
Aed6g0167 1193 Gene3D ABC transporter type 1, transmembrane domain 32 292 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 Gene3D ABC transporter type 1, transmembrane domain 293 330 IPR036640 GO:0005524|GO:0016021
Aed6g0167 1193 CDD ABC_6TM_Pgp_ABCB1_D2_like 619 934 - -
Aed6g0167 1193 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 549 IPR003439 GO:0005524
Aed6g0167 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 551 IPR027417 -
Aed6g0167 1193 CDD ABC_MTABC3_MDL1_MDL2 949 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0167 Aed-Chr6 1471235 1479573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0167 47 557 Calmodulin-binding Proteins AT2G36910 35.652 2.80e-87 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0167 K05658 - gmx:100819045 2176.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0167 6 1471235 1479573 Aed6g0167 6 1471235 1479573 ECH