Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0165 ATGCAACGCAATGCAACAGTACACAGTAGTTCCAGCATGAGAGGGAAACACCAGCAGCGTGCAGCGGAAAATTCCTCCGTCACTCCCACTCCCAACCCTTCTTCTCCTCATCACAACCACAATTTGGGCCCGCTAAACCACCGCAGGCCCGCCGCACGTAGAAACCGAGGCCCGCAACACCACCCGAACTTTGAATACCGTGTCGTCAACAACCCCGAGTCGGTCCCTTCTTCCAATTCTCACTCCGTGGAGGATGTAATTGTAAACGTTGACGCCGCTGTCGTCACGCCCCGAAATCTCGATAACGAGGACGGTGCTTGTGCCTCCCAGCTCAACACCGTTGATGACGCCGATCGCGTGGCTAGTTCAAGCAAGTTCGAGGAAGGAGACGACGACGATGATGATATTCAGGCTAGGCTTGATAAGTTGCTCAGTAAAATCGAGGAACCTGAATTGTCCGAGGAACAGATCAGAGTCAACGATCAATTGCAGCAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGGTGGAAAGGCCTGCGTTGTTTTCAGATTCATATACACGATGATGTTTCGAGTGAAATTGCCATCACTGGTAACCTGAACTCTCTCAATCAACTTGAGACTGTAAGCAGCAATTCAGATGAGTTCTTATATACTTTCAAAGTCCAATATCTTCCACCAATTGTTTTGACGTGTTTATTACCTAAGTCGTACCCAAGCCACCGACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCCATGAAGATTCTGAATCTCTGCTCCAAGTTGGATTCAATATGGGAAGAACAACAGGGGCAGGAAGTGATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTTGGATTTGATGAGGAAATCATGCTTGGGCCATATGGCATGAATCATGTCCAGGATGAGCGTGTTATTTCAGGAGCTGAATGCATTGATGTTGATATTCCTTTTTTACGAAGTTACAACAATCAGAGACACAACGAGATCTTCCTCAAAGAATTGCATGATTGTAACATTTGCTTTAGTGAATATGCAGGTTCTGACTTTATCTGGTTACCATGCAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTGCAGTTATGATTCCTCCTGGCCTTTTAAAACGCTTGCTGGATGACACAGATTTTGAGCGCTGGGAATCCATGATGTTGGAAAAAACCCTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGGGAACGACGCCATGTTGGGATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCGTCTAGATTAAAGGAAGATCAAAAGCAAAGGGAACGTGAAAAGATCAATGAGATGCTCAGTATGAAAGAAATTCACCGTGATTCCAAGCTGTGCCCATCTTGTGACATGGCAATTTCTCGAACCGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCAATTGATCCATCAGACCCATATGGACATTTCAGGGATGGTTCATGTGAATTGTTCCCACGAGAAATGGTTGATTCCTGGGAAGAGCGCATAAATCATCGCCAGGTGGTAGGACAATTACAGGCTGAGCTCTTTCCTCAGCGTGGCTTGGTGTGTCCTAATTGTCGTCAATATAATCCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGTCAAAGCCATTACTGCTACTTATGCAAAGAGATTGTCAGGCGTGGCACTAAGCATTATGGACCAAAGGGCTGCAAACAGCACTCCGAGGGATAG 1911 0.4453 MQRNATVHSSSSMRGKHQQRAAENSSVTPTPNPSSPHHNHNLGPLNHRRPAARRNRGPQHHPNFEYRVVNNPESVPSSNSHSVEDVIVNVDAAVVTPRNLDNEDGACASQLNTVDDADRVASSSKFEEGDDDDDDIQARLDKLLSKIEEPELSEEQIRVNDQLQQDEILVVESIYGENVFSLERWKGLRCFQIHIHDDVSSEIAITGNLNSLNQLETVSSNSDEFLYTFKVQYLPPIVLTCLLPKSYPSHRPPIFTLSVKWLEPMKILNLCSKLDSIWEEQQGQEVIYPWVEWLHGSSLSHLGFDEEIMLGPYGMNHVQDERVISGAECIDVDIPFLRSYNNQRHNEIFLKELHDCNICFSEYAGSDFIWLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCAVMIPPGLLKRLLDDTDFERWESMMLEKTLASMSDVVYCPRERRHVGIACMSLDMKLQILQDRQNSSRLKEDQKQREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVDSWEERINHRQVVGQLQAELFPQRGLVCPNCRQYNPKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0165 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 439 IPR013083 -
Aed6g0165 636 Gene3D Ubiquitin Conjugating Enzyme 152 302 IPR016135 -
Aed6g0165 636 ProSiteProfiles TRIAD supradomain profile. 352 634 IPR044066 -
Aed6g0165 636 SUPERFAMILY RING/U-box 581 633 - -
Aed6g0165 636 SUPERFAMILY RING/U-box 351 435 - -
Aed6g0165 636 SMART ring_2 585 614 IPR001841 -
Aed6g0165 636 SMART ring_2 356 403 IPR001841 -
Aed6g0165 636 Pfam RWD domain 162 295 IPR006575 GO:0005515
Aed6g0165 636 Pfam IBR domain, a half RING-finger domain 492 536 IPR002867 -
Aed6g0165 636 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 119 458 - -
Aed6g0165 636 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 472 618 - -
Aed6g0165 636 SMART ibrneu5 484 549 IPR002867 -
Aed6g0165 636 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 119 458 IPR031127 GO:0004842|GO:0016567
Aed6g0165 636 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 472 618 IPR031127 GO:0004842|GO:0016567
Aed6g0165 636 ProSiteProfiles Zinc finger RING-type profile. 356 404 IPR001841 -
Aed6g0165 636 MobiDBLite consensus disorder prediction 1 82 - -
Aed6g0165 636 ProSitePatterns Zinc finger RING-type signature. 373 382 IPR017907 -
Aed6g0165 636 Pfam zinc-RING finger domain 356 401 IPR001841 -
Aed6g0165 636 MobiDBLite consensus disorder prediction 1 41 - -
Aed6g0165 636 ProSiteProfiles RWD domain profile. 166 301 IPR006575 GO:0005515
Aed6g0165 636 SUPERFAMILY RING/U-box 488 544 - -
Aed6g0165 636 MobiDBLite consensus disorder prediction 42 56 - -
Aed6g0165 636 Gene3D - 470 577 - -
Aed6g0165 636 SMART RWD2001b 166 301 IPR006575 GO:0005515
Aed6g0165 636 SUPERFAMILY UBC-like 160 295 IPR016135 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0165 351 561 ARIADNE family AT3G27710 22.845 2.57e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0165 K11971 - gmx:100500662 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0165 6 1453931 1459627 Aed6g0165 6 1453931 1459627 ECH