Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0162 ATGACATTGGTTATCAGAGAGAGAAGACACAAACAAGCTCTAAGTCTTTCGTTACCAAAACCTCCTCCAATTCCAATGTCACATTCTGATTTCCCTCACCAAATCCACATACCAGCATTGTTTCCATCCCCATCTTCTTACCATGTAGATTCTTCTCCGGGAATCGTCAAGGACCTTTCGGACCTTGAGAAGCTAGCAGTTCTTGGCCATGGAAATGGTGGCATAGTCTACAAAGTTTATCACAAGAAGAACCGCTCCTTCTATGCATTGAAGGTCCTACGCTTGATTGAGAATATCCTTGAGGCCGAGATTCTAAAGCGAGTGGATTCTCCTTACATAGTAAGGTGTCATGCAATTTTTGACAACAACGATAACTGCAGCGAGGGTGGTGACATTAGTTTTGTCATGGAATACATGGAAGTAGGATCATTGCATGATGTTCTGCGACAGCACCGCAGGCTGCCGGAGGATGTGATCTCGGTGTTGGCCAAGCGTGTGTTGGAAGGGCTTAACTATCTGCACGGCATGCACATCGTCCATAGAGATATTAAGCCCTCCAACTTACTTATAAATGAGAAGGGCGAGGTGAAGATTGCAGATTTTGGAGTAAGTCACGTGGTGGAAGGAAAGTTTGAGGTAAATGGCGACTCCAATACAGGGACATGCGCCTACATGAGTCCGGAAAGGATTGATCCGGAGACATGGGGTGGCGAGAATGCAGATGAGTTTGCAGGAGATGTGTGGTCTATGGGAGTGGTGATGTTGGAATGTCTTTTGGGTTATTTTCCATTGATTGGTCCAGGGCAGAGGCCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAACCTAGAGATGCCAGAAAAGGCATCACCAGAGTTTCAAAATTTTCTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTGGAGCTTCTAAACCACCCTTTTGTGTGTAGAAGAAACTGTTGCTGTGGGTTTGGAGATTATGTTCTTCGGGACTATTTTCACTAG 1029 0.4538 MTLVIRERRHKQALSLSLPKPPPIPMSHSDFPHQIHIPALFPSPSSYHVDSSPGIVKDLSDLEKLAVLGHGNGGIVYKVYHKKNRSFYALKVLRLIENILEAEILKRVDSPYIVRCHAIFDNNDNCSEGGDISFVMEYMEVGSLHDVLRQHRRLPEDVISVLAKRVLEGLNYLHGMHIVHRDIKPSNLLINEKGEVKIADFGVSHVVEGKFEVNGDSNTGTCAYMSPERIDPETWGGENADEFAGDVWSMGVVMLECLLGYFPLIGPGQRPDWATLMCAICFGENLEMPEKASPEFQNFLRRCLEKNWRKRATVLELLNHPFVCRRNCCCGFGDYVLRDYFH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0162 342 Gene3D Phosphorylase Kinase; domain 1 48 136 - -
Aed6g0162 342 CDD PKc_MAPKK_plant_like 60 323 - -
Aed6g0162 342 Pfam Protein kinase domain 63 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0162 342 SMART serkin_6 62 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0162 342 ProSiteProfiles Protein kinase domain profile. 62 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g0162 342 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 326 IPR045269 GO:0004674|GO:0006914
Aed6g0162 342 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 326 - -
Aed6g0162 342 SUPERFAMILY Protein kinase-like (PK-like) 39 328 IPR011009 -
Aed6g0162 342 Gene3D Transferase(Phosphotransferase) domain 1 137 329 - -
Aed6g0162 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Aed6g0162 342 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0162 Aed-Chr6 1441952 1442980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0162 1 326 MAP Kinase Kinase Gene Family AT1G32320 52.121 1.29e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Aed6g0162 Pkinase 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0162 K20604 - gmx:100817973 578.17