Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0160 ATGCTTGGTCAACGAAACAACGTGACCAAAAATGCCCTCATGTCTGCTTCGCTGGAACAAACACGTGTACTGCGGGTCCACGTGGACGCGTCGGTAGGGAATTACAACCAAGAGTTGCATTACATTTACCCGAAGAAACTTCCCTCGACTCGTCATCATTCATCACCAAACAAACAAACATTCATTCATTCCACGCTTTCATCAAACCAAACCTTCTTCAATCTCCTCAGTCCCCGGTGGGTTCGGAAATCGGAGCCTCTAATTCGCAACGTTCCCCCTATCCCAGTACCCAAACACCAACCTACCTTTCCTCCTCTTTCTCAACTCCAGATTCTCTTCCTCAGAAAAATCAAAAAAAAAATGAGCTTTCAGGACATCGAGGCCGGCCGGTCCCTCGCTTCCCGGCGCAACCTCATCAATGGTAAACAAGACCCCACGCAGGCGGTGGCTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTCCATAAGACGAGACTGCATATTGGACAATTGGTGAAGGATACATCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAATGTTGAAGTTAATGCAAGTAAGAAGATAGCTGATGCTAAGCTTGCAAAAGATTTTCAGGCCGTGTTGAAAGAATTTCAGAAGGCCCAGCGTCTTTCGGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGCTCTTCCATCCAGCTATACACCCAGTGAAGTAGACATTAGCTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCACGAGCAAGGAACAATGATTGATGATATTGGGTCCAATATTGATCGTTCCCATGAAGCAACTGGACAAGCAAAATCTCAACTTGCCAAAGCTTCAAAGACTCAAAAATCAAATTCATCTTTGACATGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTTCTTGCTGCTTAG 1182 0.4594 MLGQRNNVTKNALMSASLEQTRVLRVHVDASVGNYNQELHYIYPKKLPSTRHHSSPNKQTFIHSTLSSNQTFFNLLSPRWVRKSEPLIRNVPPIPVPKHQPTFPPLSQLQILFLRKIKKKMSFQDIEAGRSLASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAALPSSYTPSEVDISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIDRSHEATGQAKSQLAKASKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0160 393 SMART tSNARE_6 295 362 IPR000727 -
Aed6g0160 393 Pfam SNARE domain 336 388 IPR000727 -
Aed6g0160 393 PANTHER SYNTAXIN 122 392 IPR045242 -
Aed6g0160 393 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 300 362 IPR000727 -
Aed6g0160 393 CDD SynN 143 268 IPR006011 GO:0016020
Aed6g0160 393 ProSitePatterns Syntaxin / epimorphin family signature. 306 345 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed6g0160 393 SUPERFAMILY t-snare proteins 142 355 IPR010989 GO:0016020|GO:0016192
Aed6g0160 393 Gene3D - 294 393 - -
Aed6g0160 393 Gene3D - 140 253 - -
Aed6g0160 393 PANTHER SYNTAXIN OF PLANTS PROTEIN 122 392 - -
Aed6g0160 393 SMART SynN_4 133 247 IPR006011 GO:0016020
Aed6g0160 393 Pfam Syntaxin-like protein 150 249 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0160 Aed-Chr6 1432579 1437533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0160 121 381 SNARE and Associated Proteins AT5G46860 78.927 1.45e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0160 - K08488 gmx:100810149 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0160 6 1432579 1437533 Aed6g0160 6 1432579 1437533 ECH
Aed6g0160 6 1432579 1437533 Aed7g1452 7 14938140 14943232 PCT