Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0116 ATGGGTCGGAAACACGACGCCGTTTTGGTCAGCGAACCAGTTGCCGAAGAAGCCCCTCACAGCCCCGAGTTCGATTCCGAGAAGAAGAAGAAAAAGAAGAATAAGAACAAAGACAAGCACCAAAGTGGAAGCAGCCCCAAACGAAAGCTCGACGAACTCGATCCTCAAAACGGCACCGAATCGAAGAAGAAAAAGAAGAAGAATAAGCACCACGAGTCCAAAGACAACGCCGAGGAAACCAACGGCGACGGCAACAACAACGAAAACGGCGCTAATCGCGACGAAACTGTGACGGAAAGGTCCGTGGCGGTCACCGGCAAGAATGCGGATGACGCAAAATACGCGGCGGTGCAGAGCTTCGCGGATTCGGGGCTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCCCCGATCCAGTCCCGAGCGTGGCCTTTCTTATTCGACGGTCGTGATTTGATTGGAATCGCTGCCACTGGTTCAGGGAAGACTTTGGCGTTCGGCTTACCGGCGGTTATGCATGTTTTGGGAAGGCGGAAGGGTAAAAATTCCAAGGGTCGGAGACCTCTTTGCCTCATGCTCTCTCCCACTAGAGAACTTGCTCAACAAATATCAGATGTCATGTGTGAGGCTGGTAGGTCTTGTGGCGTGGAATCAATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATTTGATTGAAATGGGCGTCTTGTCCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATCCTGGGTCAGACATGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATCACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAGGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCTCGTGATAAGCGCCTGGTTACATTACTGGAAAAGTACCACAAATCTCAGAAGGGTTGGAAGGTTGTATCAATACACGGGGACAAATCCCAACATGAGCGCACAAAGGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCATGCAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAACTGTACCGGATTCTCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCACACTTCAAGGAAATCCCTGCTGGTGCTCCAAAGTCTCAAAAGAAAACATTTAACGACTCTGACGATGAATGA 1542 0.4792 MGRKHDAVLVSEPVAEEAPHSPEFDSEKKKKKKNKNKDKHQSGSSPKRKLDELDPQNGTESKKKKKKNKHHESKDNAEETNGDGNNNENGANRDETVTERSVAVTGKNADDAKYAAVQSFADSGLPENVLECCKGFEKPSPIQSRAWPFLFDGRDLIGIAATGSGKTLAFGLPAVMHVLGRRKGKNSKGRRPLCLMLSPTRELAQQISDVMCEAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVLSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVTLLEKYHKSQKGWKVVSIHGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQTVPDSLLKFGTHVKKKESKLYGAHFKEIPAGAPKSQKKTFNDSDDE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0116 513 MobiDBLite consensus disorder prediction 1 101 - -
Aed6g0116 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 477 IPR001650 -
Aed6g0116 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 327 IPR027417 -
Aed6g0116 513 SMART helicmild6 356 438 IPR001650 -
Aed6g0116 513 Pfam DEAD/DEAH box helicase 141 308 IPR011545 GO:0003676|GO:0005524
Aed6g0116 513 Pfam Helicase conserved C-terminal domain 356 438 IPR001650 -
Aed6g0116 513 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 366 - -
Aed6g0116 513 PANTHER BNAA08G07020D PROTEIN 366 499 - -
Aed6g0116 513 PANTHER BNAA08G07020D PROTEIN 11 366 - -
Aed6g0116 513 CDD DEADc 134 325 - -
Aed6g0116 513 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 366 499 - -
Aed6g0116 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 465 IPR027417 -
Aed6g0116 513 SMART ultradead3 135 341 IPR014001 -
Aed6g0116 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Aed6g0116 513 Gene3D - 328 480 IPR027417 -
Aed6g0116 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 144 IPR014014 GO:0003724
Aed6g0116 513 MobiDBLite consensus disorder prediction 39 61 - -
Aed6g0116 513 CDD SF2_C_DEAD 338 447 - -
Aed6g0116 513 Gene3D - 14 327 IPR027417 -
Aed6g0116 513 MobiDBLite consensus disorder prediction 82 101 - -
Aed6g0116 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 324 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0116 Aed-Chr6 1062599 1066849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0116 117 446 Eukaryotic Initiation Factors Gene Family AT3G19760 34.746 2.99e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0116 K14811 - gmx:100305353 869.381