Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0090 ATGGCCGTGTCTTTGACGCAGGGTGCGATAGTGGCAATGTGCAGTGACAATCCCCCCGATGACTTGTTCCCAGTGCTGCAGGTTATCGAGTTGAAGCTGGTGCAGTCGCAGCAGAACAGCAACATCGAGAGGTACCGCGTGGTTCTCTCTGACGGTGTATACTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGACTTGATTCATTCTGGAAAGCTGCAGAAAGGTTCCGTTGTTAGACTCTCTCAGTTCATCTGCAACGTTGTCCAGAGCCGCAAACCTGTGATTCTGAATGCTGCAGGAGAAATATTTCTGGAACATGGGTGGCTAGTTTTGCTATGGTTGATTATTATCATCGTTGAGGTAGATGTTGTACTGGAGATATGTGAGCTGATTGGACAACCTGTGCCAGTACCAAGAAATGCAAATGCAGAATCTGCCACCGGTCAATCAGGAGTCACCTCCGGGAATCCACAACCTTTGAATAGTGGTTCACACGCAGGTGGCATGACTGCTAGACCAAATGTTGCTGCACCATTTCCAGTTCATCCAAACGTGAATCCTTCTGCCAGTAGTGCTTATTCTAGCAATGCCCCTGTTGCTTATCCTAAAGTAGACCCTGGAGTTAGTTTGCCTAGATCAGCACCATTCAGTGGGTCTTCTGGTGGTCAGAACACAGGTTTCCGCAATCCCCAATCTGAGGCTTCAAGGCCCTTGCAAAACTCTTATGCCCGTCCACCTCAGCAGTCTATGTACCGTCAGCCATCTCCAATGTACACTAACAGAGGGCCAACTGGAAGAAATGAAGCTGCCCCCAGGGTAATTCCGATAGCGGCATTGAATCCATACCAGAATATGTGGACGGTTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATACCAATGCCAAAGGTGAGGGCAAGGTGTTTTCTTTTGACCTTCTGGATTCTGATGGTGGACAAATTCGGGCAACTTGCTTCAATGCTGTGGCTGATCAGTTCTATAATGTAATTGAAGCTGGGAAGGTATATCTAGTTTCCAGGGGAAACATTAGGCCAGCTCAGAAGAATTTTAATCACCTTCCCAATGATCAAGAGATAACCCTTGACGTGACATCAGTTATACAGCCATGCCCTGATGATAATAACTCAATTCCAACGCAGACATTTAATTTTCGTCCCATTAGTGAAATTGAAAGTGTGGAAAACAACACCATTTTAGATGTGATTGGTGTGGTGACTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAGTTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTATTGAGTTAACTTTATGGGGAAATTTTTGCAATGGAGAAGGACAAAGGTTACAAACTATTTGTGATGCTGGGGAATTTCCAGTCTTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAATGGGAAATCTGTTGGGACTATAGCCACTAGCCAGCTCTATGTGGAGCCTGATTTTCCTGAGGCCCGTACACTGAAAAGGTGGTTTGAAAATGAAGGGAAGAATGTCCCATCTCTCTCTATTTCCAGAGAAATGTCTATTTCTGGCAAGGCTGATGTGCGGAAGACTATAGCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTGTTTGCATCATGTTCATACATTAAGACTGAAAACTTCTGTTACCCAGGGTGCACTCTCAAGATAGGGGATAGGCAATGTAACAAAAAGGTGTCTGATAATGGTGATGGGAAATGGCTTTGTGAAAGATGTAACCAGATTGTTGACGAATGTGAATATAGGTATCTACTGTCAATTCAGATACAGGATCACACTGGCATAGCATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGTATACCTGCAAAAGATTTGTTTTATCTGAAGCACGAAGAGCATGATGATGACAAATTTTCTGAAGTCTTCCACAAGGTTCTCTTCACAGAGTACATGTTCAAGTTAAAAATAAAAGAGGAAATATACAGTGATGAACAACGCCTCAAGTCAACGGTAGTAAAAGCAGAAAAGGTAAACTTTGCATCTAAATCTAGAGTTGTTTTGGAGTTGATTAACGAACTCAGGACTGAGAAATCAAAAGGTACCACCATTCCCAACTCTGTAACCAATAATACTGGACCAGGGGAAGTTACACCGCCACCAGCATATCATCCAATAAAGAGCAACTCTAATACAAGTAGAGATTTTGGGATGCCGCTGGCAAATCAAGTGGGTCAACAGTATAGAGGGCAATATAGCAATCTTTCCTCAGCAGGTGCTCCTGTTTCATATCCATCATGCACCAACTGTGGAGGCTCTGGCCATAGCTCTGCAGTTTGCCCAAATATTAGAAATGGACATGAACATTCTGCTGCAATCCCACGAGCATGTTTGGATCTTCGTGGGGTTCAAACTCAAAAGTGTCGCCACGTCACGGGGACACGTTCGGAATTTAGAAAAATCCCAATACCCTTGTCCTTGTGCGCCATTCCGAAATTCGCGACTCACTCCGAAAACGAAACAAAGAAAGTGAAAAGCAAAGAAAACGGCAACAATGGCGTCTCTGACGGAGGCGGTGATACCGGAGATTTGCAGTGGCAATCGCTGCGATCACTTGCGACCGGTGCTGCAGGTTATCGACTTGAGCCTGGTGCAGCAAAACAGCAACGTCGAGAGGTACCGTTTGGTTCTCTCAGACGGTTCCTTTTACCAGCAAGGAACGATGGCTACGCAGTTGAACGAATTGGTTCATTCCGGAAGGTTGCGCCAAGGCTCCGTTGTTCAACTCAAACAGTTCCTCTGTAA 2871 0.45 MAVSLTQGAIVAMCSDNPPDDLFPVLQVIELKLVQSQQNSNIERYRVVLSDGVYYQQGMLATQKNDLIHSGKLQKGSVVRLSQFICNVVQSRKPVILNAAGEIFLEHGWLVLLWLIIIIVEVDVVLEICELIGQPVPVPRNANAESATGQSGVTSGNPQPLNSGSHAGGMTARPNVAAPFPVHPNVNPSASSAYSSNAPVAYPKVDPGVSLPRSAPFSGSSGGQNTGFRNPQSEASRPLQNSYARPPQQSMYRQPSPMYTNRGPTGRNEAAPRVIPIAALNPYQNMWTVKARVTAKGELRHYTNAKGEGKVFSFDLLDSDGGQIRATCFNAVADQFYNVIEAGKVYLVSRGNIRPAQKNFNHLPNDQEITLDVTSVIQPCPDDNNSIPTQTFNFRPISEIESVENNTILDVIGVVTSISPTASIMRKNGTEVQKRTLQLKDMSGRSIELTLWGNFCNGEGQRLQTICDAGEFPVLATKAVRVNDFNGKSVGTIATSQLYVEPDFPEARTLKRWFENEGKNVPSLSISREMSISGKADVRKTIAQIKDEKLGTSEKPDWISVFASCSYIKTENFCYPGCTLKIGDRQCNKKVSDNGDGKWLCERCNQIVDECEYRYLLSIQIQDHTGIAWVTAFQESGEEIMGIPAKDLFYLKHEEHDDDKFSEVFHKVLFTEYMFKLKIKEEIYSDEQRLKSTVVKAEKVNFASKSRVVLELINELRTEKSKGTTIPNSVTNNTGPGEVTPPPAYHPIKSNSNTSRDFGMPLANQVGQQYRGQYSNLSSAGAPVSYPSCTNCGGSGHSSAVCPNIRNGHEHSAAIPRACLDLRGVQTQKCRHVTGTRSEFRKIPIPLSLCAIPKFATHSENETKKVKSKENGNNGVSDGGGDTGDLQWQSLRSLATGAAGYRLEPGAAKQQRREVPFGSLRRFLLPARNDGYAVERIGSFRKVAPRLRCSTQTVPL 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0090 956 Gene3D - 273 383 IPR012340 -
Aed6g0090 956 CDD RPA1_DBD_A 276 379 - -
Aed6g0090 956 Gene3D - 525 716 IPR012340 -
Aed6g0090 956 ProSiteProfiles Zinc finger CCHC-type profile. 789 804 IPR001878 GO:0003676|GO:0008270
Aed6g0090 956 Gene3D - 4 139 IPR012340 -
Aed6g0090 956 MobiDBLite consensus disorder prediction 211 269 - -
Aed6g0090 956 MobiDBLite consensus disorder prediction 860 887 - -
Aed6g0090 956 Gene3D - 386 524 IPR012340 -
Aed6g0090 956 MobiDBLite consensus disorder prediction 872 887 - -
Aed6g0090 956 Pfam OB-fold nucleic acid binding domain 287 376 IPR004365 GO:0003676
Aed6g0090 956 MobiDBLite consensus disorder prediction 141 169 - -
Aed6g0090 956 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aed6g0090 956 CDD RPA1_DBD_B 408 515 - -
Aed6g0090 956 SUPERFAMILY Nucleic acid-binding proteins 274 386 IPR012340 -
Aed6g0090 956 Pfam Replication factor-A C terminal domain 558 707 IPR013955 -
Aed6g0090 956 PANTHER REPLICATION FACTOR A 1, RFA1 3 755 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed6g0090 956 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 231 714 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed6g0090 956 CDD RPA1N 8 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aed6g0090 956 Pfam Replication protein A OB domain 397 500 IPR031657 -
Aed6g0090 956 SUPERFAMILY Nucleic acid-binding proteins 392 521 IPR012340 -
Aed6g0090 956 SUPERFAMILY Nucleic acid-binding proteins 539 716 IPR012340 -
Aed6g0090 956 PANTHER REPLICATION PROTEIN A SUBUNIT 3 755 - -
Aed6g0090 956 MobiDBLite consensus disorder prediction 139 183 - -
Aed6g0090 956 CDD RPA1_DBD_C 542 713 IPR013955 -
Aed6g0090 956 MobiDBLite consensus disorder prediction 214 263 - -
Aed6g0090 956 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0090 Aed-Chr6 891812 896983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0090 1 805 Core DNA Replication Machinery Family AT5G45400 48.079 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0090 K07466 - gmx:100778597 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0090 6 891812 896983 Aed6g0090 6 891812 896983 ECH