Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0083 ATGCATTCGCAGGGAGTTGAATCCGACAGGGCATTGCTAGGATCATTTTTTGAGCAATGCCGTGTGAAAATGGGGAACTGTGTTTTTCTTTGTGATCCTAGAGATTTTTTTGAACATGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTGCAAGCTGCCATACAGCGATTGCAACCTTCCCTTTCTGAAAAATCACCAGTCAAGAAAGGTCGCACTCACTCTGAATCACCTTCCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAATCCAAATCTCAGCAAAAACTGGGGAAATTTACTGAGGCTGCTAATGATTGTAAACGTATTCTTGATGCCGTTGAGAAGATATTTTATCTGGGTATTCCTGATATTCAAGTGGATAATAGATTGCAAGAAATCGTTGGCCATGCAGTTGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTATGATGAGGCAATATCTGCTTATAGGCGAGCCCTTCTCGGTCAATGGAACCTTGATAGTGATTGCTGTGCAAGAATTCAGAAGTCATTTGTTATTTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCGTATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGATACTTTTGAAAAAGTTTTCCCTTGGTAAGATGAAATGGGATCCTTCAGTCATGGAACACCTGAGTTTTGCACTTTCTATATGTAGTGGAACTTCTATGTTAGCAAAGCAACTTGAAGAATTGATTCCTGGAGTATACCATCGAATTGATTGTTGGAATTCTTTAGCTTTATGTTATAGTGGAGCTGGACAAAACAACAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTGTTGTTAGCAGCCAGGATCTGCAGTGAGGATTCACATCTTGCTGCTGAGGGAGTGAACCATGCACAGAGGGCAATTAGTACGGCTCGTGGCCCAGATGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTACGAGAGGTCTCACCTTCAGTCCAAAGCTCTGGAGTCATTGGTAGTGGCAATTAAATTGGAGCCAAACAATTCTGATCTGCTTTTCGAATTGGCTGTTCAGTATGCAGAGCACCGAAATTTGCCTGCTGCTTTGCGCTCTGTGAGGCATTTCTTTAATGAAACTGGTGGTTCTGAATCGAAAGCTTGGAGACTGCTTGCTCTAATTTTGTCTGCACAACAAAGATTTTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTCAGCTGAAAGCAAAGTTGAAGATCTCCCAATCTCGACCCATGGATGCTATTGAAACTTATCGATACCTTCTTGCATTGGTTCAAGCCCAGAAAAAATCCTTTGGGTCTCTCCAAATTAGTTCAAAGGTTGAGGATGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTGTTTTGTTTGAAGGACGTGGGAAAAATGAAGAAGCTCTTTGTGCTACTATCAATGCTGTACTAGCTGAACCAAACAATGTTCCATGCAAGATCTTGATGGGTACTTTGATTCAAAAAATGGGTTCAAAGTATTTGGCTGTTGCAAGAAGCTCACTGTCTGATGCACTCCGAATCGAACCCACAAACCGCAAGGCTTGGTATTACTTGGGACTGCTTCACAAGCACGATGGCCGAATAAGTGAAGCTGCCGACTGCTTCCAAGCAGCTTCAATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTGTACCTTGA 1992 0.4247 MHSQGVESDRALLGSFFEQCRVKMGNCVFLCDPRDFFEHEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKSPVKKGRTHSESPSSVSQHAASLVLEAIYLKSKSQQKLGKFTEAANDCKRILDAVEKIFYLGIPDIQVDNRLQEIVGHAVELLPELWKQAGCYDEAISAYRRALLGQWNLDSDCCARIQKSFVIFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLKKFSLGKMKWDPSVMEHLSFALSICSGTSMLAKQLEELIPGVYHRIDCWNSLALCYSGAGQNNSALNLLRKSLHKHERPNDLTSLLLAARICSEDSHLAAEGVNHAQRAISTARGPDEHLKGVALRMLGLCLGKQAKVASSDYERSHLQSKALESLVVAIKLEPNNSDLLFELAVQYAEHRNLPAALRSVRHFFNETGGSESKAWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLQLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSLQISSKVEDDKINEFDIWHGLANLYASLSHWKDAEICVLFEGRGKNEEALCATINAVLAEPNNVPCKILMGTLIQKMGSKYLAVARSSLSDALRIEPTNRKAWYYLGLLHKHDGRISEAADCFQAASMLEESDPIESFSSVP 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0083 663 SUPERFAMILY TPR-like 106 431 IPR011990 GO:0005515
Aed6g0083 663 SMART tpr_5 621 654 IPR019734 GO:0005515
Aed6g0083 663 SMART tpr_5 106 139 IPR019734 GO:0005515
Aed6g0083 663 SMART tpr_5 446 479 IPR019734 GO:0005515
Aed6g0083 663 SMART tpr_5 290 323 IPR019734 GO:0005515
Aed6g0083 663 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Aed6g0083 663 PANTHER CALMODULIN-BINDING PROTEIN 39 662 - -
Aed6g0083 663 MobiDBLite consensus disorder prediction 79 98 - -
Aed6g0083 663 Gene3D Tetratricopeptide repeat domain 30 358 IPR011990 GO:0005515
Aed6g0083 663 Gene3D Tetratricopeptide repeat domain 560 659 IPR011990 GO:0005515
Aed6g0083 663 PANTHER PROTEIN NPG1 39 662 IPR043376 -
Aed6g0083 663 Gene3D Tetratricopeptide repeat domain 379 559 IPR011990 GO:0005515
Aed6g0083 663 SUPERFAMILY TPR-like 39 185 IPR011990 GO:0005515
Aed6g0083 663 SUPERFAMILY TPR-like 389 647 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0083 Aed-Chr6 851434 856085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0083 40 662 Calmodulin-binding Proteins AT2G43040 67.907 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0083 K21843 - gmx:100814609 1108.59