Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0074 ATGGGCGACAATCATGGCAATCATGATCCCTTATCAAACAACGTTGTTATCCTACTCATTGCCATGGGTGCTGCAGCTTTCGTTGTCTCAATGTACCATGTCATAGCTATTTGCTGGTGCAATAGCTACCGCATCACAAACCAAAACCGACAACAACGGCCGCCACCGACAGCCAATGCTTCTGCCGTGGTGCACATGATTCCCACACACATATATAGCAAGAAGAGAGTTGATGGTGGTGCGGTTCAGGGTCAACCCAACGGTGAAGTTTCATATGATCGTGATAACGATGATCGTGGTGGTGATACATGTGCAGTGTGCTTGGGAGATTTTGAAGAAGGTGAGGAGTTGAGAACGTTGCCTGAGTGCATGCACTCATTTCACGTGCCATGCATTGACACGTGGCTGAGTTCGCATTCGAGTTGTCCGATATGCCGGAGCAGTGCCACACCTTCTATGGAGGTGCTCCACACCGAGCATGATTTCAATTATGCATATCATGAGCACAGCATAGATATGGCGCAGTTTGCTATCGCACGTAACGGGTTTGTGATTCGAAGGTGA 564 0.484 MGDNHGNHDPLSNNVVILLIAMGAAAFVVSMYHVIAICWCNSYRITNQNRQQRPPPTANASAVVHMIPTHIYSKKRVDGGAVQGQPNGEVSYDRDNDDRGGDTCAVCLGDFEEGEELRTLPECMHSFHVPCIDTWLSSHSSCPICRSSATPSMEVLHTEHDFNYAYHEHSIDMAQFAIARNGFVIRR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0074 187 SUPERFAMILY RING/U-box 103 155 - -
Aed6g0074 187 Pfam Ring finger domain 102 146 IPR001841 -
Aed6g0074 187 CDD RING-H2_RNF111_like 103 148 - -
Aed6g0074 187 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Aed6g0074 187 SMART ring_2 104 145 IPR001841 -
Aed6g0074 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 153 IPR013083 -
Aed6g0074 187 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 184 - -
Aed6g0074 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 184 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0074 Aed-Chr6 824500 825345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0074 12 146 C3H Transcription Factor Family AT1G76410 37.037 4.95e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0074 - - gmx:102660266 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0074 6 824500 825345 Aed6g0074 6 824500 825345 ECH